Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003748.1

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

37586 .. 38584

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003748.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgaccgaaccaaccttcaagcaattcgacatcgtttccgatcactcagaccacaactacagtaaggaggaaaagcaagggcaggggaagaagaacaacaaaagcggagatggagattgtttcaccaacagtggcagtactgtacacaagaagatcatgcgtgagtggaaaattttggagaatggtctcccggacacaatctatgtgcgcgtgtacgagaagcgcgtcgacctgatgagggcggtgattgtcggagcagccggcacaccttaccacgttggcctctatttctttgacattaagtttccgactaactatccgaaccgcccgcctcaagtccattaccggtcgcacgggttaagtacgaacgagcacctaggggtgaacggacatatctgcttgagccttctcaacacctggattggttgggggaaggagcggtgggcgttcgttctcaatgccaaggccgagtacctctctgacaacgaggttgcttttataaacaaatgcatatcgacggtgcatttgctccgaaatcctccaaagaattttgacggattcattgctggacattttcgtagtaaagcacctgacatattgagagcctacatcgcttatgcaaatgggcgcgtgcttgtagggcactacaacaatgagactgaggtggcatgccttactgtggaaaataattcacgttactatgttaccgagacgttcaaggaccggatggaggagctgtacccagtactcgtccaggcttttaaaaagaatgggttttctgcagaagattgggtggaggaggacttgattgtggagaggaaacccttgaagcccttctcatggcacgcgcgcaagtgttttttagcttgtctaccttgtttaccatgggtggctaatgatgatgatgatgatcgtgatgagccattattgacaagcaaaggcaaattagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

317

Amino Acids

36.4

Weight (kDa)

6.64

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	2 cut(s)	228, 871
AccII	CGCG	5 cut(s)	210, 225, 630, 848, 850
AciI	CCGC	5 cut(s)	105, 242, 325, 329, 439
AcsI	RAATTY	2 cut(s)	171, 547
AfaI	GTAC	7 cut(s)	139, 144, 215, 364, 473, 740, 747
AfiI	CCNNNNNNNGG	4 cut(s)	238, 679, 730, 840
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	19, 718, 829
AjnI	CCWGG	2 cut(s)	416, 753
AluBI	AGCT	2 cut(s)	736, 866
AluI	AGCT	2 cut(s)	736, 866
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	191, 650, 704
AoxI	GGCC	2 cut(s)	280, 465
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	171, 547
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
AsiGI	ACCGGT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	833
AspA2I	CCTAGG	1 cut(s)	376
AspLEI	GCGC	5 cut(s)	210, 225, 630, 850, 852
AspS9I	GGNCC	1 cut(s)	721
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	115, 256, 394
AvaII	GGWCC	1 cut(s)	721
AvrII	CCTAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	2 cut(s)	104, 721
BciT130I	CCWGG	2 cut(s)	418, 755
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	191, 650, 704
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	58, 780
BisI	GCNGC	1 cut(s)	258
BlnI	CCTAGG	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	2 cut(s)	139, 747
Bme1390I	CCNGG	3 cut(s)	191, 418, 755
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	721
BmrFI	CCNGG	3 cut(s)	191, 418, 755
BmrI	ACTGGG	1 cut(s)	737
BmuI	ACTGGG	1 cut(s)	737
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpuEI	CTTGAG	2 cut(s)	318, 421
BpuMI	CCSGG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	909
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	376, 462, 884
BsaWI	WCCGGW	2 cut(s)	345, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 679, 730, 840
Bse118I	RCCGGY	2 cut(s)	260, 345
Bse1I	ACTGG	1 cut(s)	743
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	2 cut(s)	418, 755
BseDI	CCNNGG	3 cut(s)	376, 462, 884
BseGI	GGATG	1 cut(s)	732
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	4 cut(s)	238, 679, 730, 840
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	60, 651
BseNI	ACTGG	1 cut(s)	743
BsePI	GCGCGC	1 cut(s)	848
BseRI	GAGGAG	2 cut(s)	746, 812
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	5 cut(s)	210, 225, 630, 848, 850
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	282, 467
BshTI	ACCGGT	1 cut(s)	345
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	4 cut(s)	191, 261, 346, 724
BslI	CCNNNNNNNGG	4 cut(s)	238, 679, 730, 840
BsmAI	GTCTC	3 cut(s)	191, 650, 704
BsmBI	CGTCTC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	282, 467
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	375, 645
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	40, 153, 910
Bsp19I	CCATGG	1 cut(s)	884
BspACI	CCGC	5 cut(s)	105, 242, 325, 329, 439
BspANI	GGCC	2 cut(s)	282, 467
BspCNI	CTCAG	2 cut(s)	59, 652
BspFNI	CGCG	5 cut(s)	210, 225, 630, 848, 850
BspMAI	CTGCAG	1 cut(s)	784
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	2 cut(s)	260, 345
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	743
BssAI	RCCGGY	2 cut(s)	260, 345
BssECI	CCNNGG	3 cut(s)	376, 462, 884
BssHII	GCGCGC	1 cut(s)	848
BssMI	GATC	3 cut(s)	40, 153, 910
BssT1I	CCWWGG	3 cut(s)	376, 462, 884
Bst2UI	CCWGG	2 cut(s)	418, 755
Bst4CI	ACNGT	5 cut(s)	62, 131, 142, 520, 679
BstAUI	TGTACA	1 cut(s)	142
BstC8I	GCNNGC	6 cut(s)	262, 329, 632, 670, 846, 850
BstDEI	CTNAG	2 cut(s)	46, 660
BstDSI	CCRYGG	1 cut(s)	884
BstF5I	GGATG	1 cut(s)	732
BstFNI	CGCG	5 cut(s)	210, 225, 630, 848, 850
BstHHI	GCGC	5 cut(s)	210, 225, 630, 850, 852
BstKTI	GATC	3 cut(s)	43, 156, 913
BstMAI	GTCTC	3 cut(s)	191, 650, 704
BstMBI	GATC	3 cut(s)	40, 153, 910
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 640
BstNI	CCWGG	2 cut(s)	418, 755
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	3 cut(s)	189, 416, 753
BstSFI	CTRYAG	2 cut(s)	58, 780
BstSLI	GKGCMC	1 cut(s)	645
BstUI	CGCG	5 cut(s)	210, 225, 630, 848, 850
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	282, 467
BtgI	CCRYGG	1 cut(s)	884
BtgZI	GCGATG	1 cut(s)	595
BtsCI	GGATG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	6 cut(s)	262, 329, 632, 670, 846, 850
CfoI	GCGC	5 cut(s)	210, 225, 630, 850, 852
Cfr10I	RCCGGY	2 cut(s)	260, 345
Cfr13I	GGNCC	1 cut(s)	721
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	7 cut(s)	138, 143, 214, 363, 472, 739, 746
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	4 cut(s)	157, 669, 840, 885
CviQI	GTAC	7 cut(s)	138, 143, 214, 363, 472, 739, 746
DdeI	CTNAG	2 cut(s)	46, 660
DpnI	GATC	3 cut(s)	42, 155, 912
DpnII	GATC	3 cut(s)	40, 153, 910
DraI	TTTAAA	1 cut(s)	763
Eco130I	CCWWGG	3 cut(s)	376, 462, 884
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	416, 753
EcoT14I	CCWWGG	3 cut(s)	376, 462, 884
EcoT22I	ATGCAT	1 cut(s)	512
ErhI	CCWWGG	3 cut(s)	376, 462, 884
Esp3I	CGTCTC	1 cut(s)	704
FaeI	CATG	4 cut(s)	160, 672, 843, 888
FatI	CATG	4 cut(s)	156, 668, 839, 884
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	2 cut(s)	228, 871
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	739
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	5 cut(s)	209, 224, 629, 849, 851
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	282, 467
HapII	CCGG	4 cut(s)	191, 261, 346, 724
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	5 cut(s)	210, 225, 630, 850, 852
Hin1II	CATG	4 cut(s)	160, 672, 843, 888
Hin6I	GCGC	5 cut(s)	208, 223, 628, 848, 850
HinP1I	GCGC	5 cut(s)	208, 223, 628, 848, 850
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	558
HpaII	CCGG	4 cut(s)	191, 261, 346, 724
HphI	GGTGA	3 cut(s)	115, 256, 394
Hpy166II	GTNNAC	6 cut(s)	145, 214, 229, 385, 872, 881
Hpy188I	TCNGA	7 cut(s)	40, 49, 254, 309, 321, 481, 533
Hpy188III	TCNNGA	1 cut(s)	914
Hpy8I	GTNNAC	6 cut(s)	145, 214, 229, 385, 872, 881
Hpy99I	CGWCG	2 cut(s)	230, 520
HpyAV	CCTTC	4 cut(s)	25, 416, 427, 844
HpyCH4III	ACNGT	5 cut(s)	62, 131, 142, 520, 679
HpyCH4IV	ACGT	3 cut(s)	276, 694, 713
HpyCH4V	TGCA	4 cut(s)	510, 523, 620, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 640
HpyF3I	CTNAG	2 cut(s)	46, 660
HpySE526I	ACGT	3 cut(s)	276, 694, 713
Hsp92II	CATG	4 cut(s)	160, 672, 843, 888
HspAI	GCGC	5 cut(s)	208, 223, 628, 848, 850
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	40, 153, 910
LmnI	GCTCC	4 cut(s)	254, 436, 534, 733
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	3 cut(s)	276, 694, 713
MaeIII	GTNAC	2 cut(s)	695, 703
MalI	GATC	3 cut(s)	42, 155, 912
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	3 cut(s)	40, 153, 910
MboII	GAAGA	4 cut(s)	100, 103, 163, 797
MhlI	GDGCHC	2 cut(s)	375, 645
MluCI	AATT	5 cut(s)	23, 171, 547, 688, 944
MmeI	TCCRAC	2 cut(s)	232, 332
Mph1103I	ATGCAT	1 cut(s)	512
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	3 cut(s)	300, 359, 762
MspI	CCGG	4 cut(s)	191, 261, 346, 724
MspR9I	CCNGG	3 cut(s)	191, 418, 755
MvaI	CCWGG	2 cut(s)	418, 755
MvnI	CGCG	5 cut(s)	210, 225, 630, 848, 850
MwoI	GCNNNNNNNGC	2 cut(s)	611, 640
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	884
NdeII	GATC	3 cut(s)	40, 153, 910
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	4 cut(s)	160, 672, 843, 888
NmeAIII	GCCGAG	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	512
NspI	RCATGY	1 cut(s)	672
PaeI	GCATGC	1 cut(s)	672
PauI	GCGCGC	1 cut(s)	848
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	558
PfoI	TCCNGGA	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	416, 753
PspGI	CCWGG	2 cut(s)	416, 753
PspPI	GGNCC	1 cut(s)	721
PstI	CTGCAG	1 cut(s)	784
PteI	GCGCGC	1 cut(s)	848
RsaI	GTAC	7 cut(s)	139, 144, 215, 364, 473, 740, 747
RsaNI	GTAC	7 cut(s)	138, 143, 214, 363, 472, 739, 746
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	300, 359, 762
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	40, 153, 910
Sau96I	GGNCC	1 cut(s)	721
ScaI	AGTACT	2 cut(s)	139, 747
ScrFI	CCNGG	3 cut(s)	191, 418, 755
SduI	GDGCHC	2 cut(s)	375, 645
SfcI	CTRYAG	2 cut(s)	58, 780
SinI	GGWCC	1 cut(s)	721
SmlI	CTYRAG	2 cut(s)	333, 400
SmoI	CTYRAG	2 cut(s)	333, 400
SphI	GCATGC	1 cut(s)	672
Sse9I	AATT	5 cut(s)	23, 171, 547, 688, 944
SsiI	CCGC	5 cut(s)	105, 242, 325, 329, 439
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	3 cut(s)	189, 416, 753
StyI	CCWWGG	3 cut(s)	376, 462, 884
TaaI	ACNGT	5 cut(s)	62, 131, 142, 520, 679
TaiI	ACGT	3 cut(s)	279, 697, 716
TaqI	TCGA	3 cut(s)	27, 228, 515
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	23, 171, 547, 688, 944
TatI	WGTACW	3 cut(s)	137, 142, 745
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	3 cut(s)	300, 359, 762
Tru9I	TTAA	3 cut(s)	300, 359, 762
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	550
TspGWI	ACGGA	2 cut(s)	402, 570
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	2 cut(s)	171, 547
XceI	RCATGY	1 cut(s)	672
XmaJI	CCTAGG	1 cut(s)	376
XmiI	GTMKAC	2 cut(s)	228, 871
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	2 cut(s)	139, 747
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.