Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

25707911 .. 25708858

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23111.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCGTGAGTGGAAAATTTTAGAGAATGGTCTCCCGGACACCATCTATGTGCGCGCCTACGAGACGCACGTAGACCTGATGAGGGCAGCGATCGTCGGAGCAGCCGGCACACCTTACCACGATGCCCTCTTTGTCTTTGACATCAAGTTCCCACTTGATTATCCGAACCGCCCGCCCCACGTCCATTACTGGTCGCACGGGTTATGTCCGAACCCTTGCCTATGGGCGAACGGTCGTGTCTGGATGAGCCTTCTCAACACAGTACTGATTGCCGGTTGGGCGATGGGGTGGTGGGTTCCATCTCAGTCGACGATTCTCCAAGTAGGGCACTACGACAATGAGATTGAGGTGCCAGCCGAGTATATTCCACAGTACGATCTTTACCTGGGGATGAAGAGACGAATGGACGAGCTGTACCCGGTCCTCGTTCAGGCTTTTAAAATAAATGGATTTTCTGCAGAAGATTGGGTGGAGCAGGACTTGTTTTCAGAGGAGATATATATGGAAGTGGAGCCCTATTCACGGTTCGCGCGCAAGTTACTTTCACAATGCCTACCTTGTCTACCATGGGCTGCTGCTGCTAATGTGCTGCTAATGATGATGATGATCGTGATCAGCCTGTTTTGGCAATCAAAAAGGCGAGTTAGATTGATTAGGATTGTTGTTTTTAATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

226

Amino Acids

26.3

Weight (kDa)

5.86

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	2 - 87	5.9e-12	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccI	GTMKAC	3 cut(s)	72, 308, 562
AccII	CGCG	3 cut(s)	54, 530, 532
AciI	CCGC	2 cut(s)	169, 173
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	3 cut(s)	264, 374, 416
AfiI	CCNNNNNNNGG	3 cut(s)	82, 430, 522
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
Alw26I	GTCTC	3 cut(s)	35, 56, 391
ApeKI	GCWGC	6 cut(s)	86, 101, 572, 575, 578, 589
ApoI	RAATTY	1 cut(s)	15
AspLEI	GCGC	4 cut(s)	54, 56, 532, 534
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	2 cut(s)	35, 419
AvaII	GGWCC	1 cut(s)	421
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	516
BbvI	GCAGC	6 cut(s)	98, 113, 559, 562, 565, 576
BccI	CCATC	3 cut(s)	50, 277, 307
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	2 cut(s)	35, 419
BcoDI	GTCTC	3 cut(s)	35, 56, 391
BfmI	CTRYAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	6 cut(s)	87, 102, 573, 576, 579, 590
BlsI	GCNGC	6 cut(s)	88, 103, 574, 577, 580, 591
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	3 cut(s)	35, 386, 419
Bme18I	GGWCC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	3 cut(s)	297, 351, 513
BmrFI	CCNGG	3 cut(s)	35, 386, 419
BmsI	GCATC	1 cut(s)	112
BpuMI	CCSGG	2 cut(s)	35, 419
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	2 cut(s)	605, 611
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	385, 566
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 430, 522
Bse118I	RCCGGY	2 cut(s)	104, 272
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	2 cut(s)	605, 611
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	385, 566
BseGI	GGATG	2 cut(s)	249, 396
BseJI	GATNNNNATC	2 cut(s)	605, 611
BseLI	CCNNNNNNNGG	3 cut(s)	82, 430, 522
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	1 cut(s)	194
BsePI	GCGCGC	2 cut(s)	52, 530
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	6 cut(s)	98, 113, 559, 562, 565, 576
Bsh1236I	CGCG	3 cut(s)	54, 530, 532
Bsh1285I	CGRYCG	2 cut(s)	93, 235
BshNI	GGYRCC	1 cut(s)	349
BsiEI	CGRYCG	2 cut(s)	93, 235
BsiSI	CCGG	4 cut(s)	35, 105, 273, 419
BslI	CCNNNNNNNGG	3 cut(s)	82, 430, 522
BsmAI	GTCTC	3 cut(s)	35, 56, 391
BsmBI	CGTCTC	2 cut(s)	56, 391
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	330, 516
Bsp143I	GATC	4 cut(s)	90, 376, 606, 612
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	2 cut(s)	169, 173
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	3 cut(s)	54, 530, 532
BspLI	GGNNCC	3 cut(s)	297, 351, 513
BspMAI	CTGCAG	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	35
BsrFI	RCCGGY	2 cut(s)	104, 272
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	2 cut(s)	104, 272
BssECI	CCNNGG	2 cut(s)	385, 566
BssHII	GCGCGC	2 cut(s)	52, 530
BssMI	GATC	4 cut(s)	90, 376, 606, 612
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	4 cut(s)	233, 262, 372, 525
Bst6I	CTCTTC	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	5 cut(s)	54, 106, 173, 354, 532
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	566
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	249, 396
BstFNI	CGCG	3 cut(s)	54, 530, 532
BstHHI	GCGC	4 cut(s)	54, 56, 532, 534
BstKTI	GATC	4 cut(s)	93, 379, 609, 615
BstMAI	GTCTC	3 cut(s)	35, 56, 391
BstMBI	GATC	4 cut(s)	90, 376, 606, 612
BstMCI	CGRYCG	2 cut(s)	93, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 578
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	3 cut(s)	33, 384, 417
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	3 cut(s)	54, 530, 532
BstV1I	GCAGC	6 cut(s)	98, 113, 559, 562, 565, 576
BtgI	CCRYGG	1 cut(s)	566
BtgZI	GCGATG	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	249, 396
Cac8I	GCNNGC	5 cut(s)	54, 106, 173, 354, 532
CfoI	GCGC	4 cut(s)	54, 56, 532, 534
Cfr10I	RCCGGY	2 cut(s)	104, 272
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	263, 373, 415
CviAII	CATG	1 cut(s)	567
CviJI	RGCY	8 cut(s)	104, 249, 356, 412, 434, 514, 572, 618
CviKI_1	RGCY	8 cut(s)	104, 249, 356, 412, 434, 514, 572, 618
CviQI	GTAC	3 cut(s)	263, 373, 415
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	92, 378, 608, 614
DpnII	GATC	4 cut(s)	90, 376, 606, 612
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	566
Esp3I	CGTCTC	2 cut(s)	56, 391
FaeI	CATG	1 cut(s)	570
FatI	CATG	1 cut(s)	566
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	612
FblI	GTMKAC	3 cut(s)	72, 308, 562
Fnu4HI	GCNGC	6 cut(s)	87, 102, 573, 576, 579, 590
FokI	GGATG	2 cut(s)	256, 403
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	6 cut(s)	87, 102, 573, 576, 579, 590
GlaI	GCGC	4 cut(s)	53, 55, 531, 533
GluI	GCNGC	6 cut(s)	87, 102, 573, 576, 579, 590
HapII	CCGG	4 cut(s)	35, 105, 273, 419
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	4 cut(s)	54, 56, 532, 534
Hin1II	CATG	1 cut(s)	570
Hin6I	GCGC	4 cut(s)	52, 54, 530, 532
HinP1I	GCGC	4 cut(s)	52, 54, 530, 532
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	4 cut(s)	35, 105, 273, 419
Hpy166II	GTNNAC	3 cut(s)	73, 309, 563
Hpy188I	TCNGA	4 cut(s)	98, 165, 210, 490
Hpy188III	TCNNGA	2 cut(s)	241, 610
Hpy8I	GTNNAC	3 cut(s)	73, 309, 563
Hpy99I	CGWCG	2 cut(s)	98, 313
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	4 cut(s)	233, 262, 372, 525
HpyCH4IV	ACGT	2 cut(s)	69, 180
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 578
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	2 cut(s)	69, 180
Hsp92II	CATG	1 cut(s)	570
HspAI	GCGC	4 cut(s)	52, 54, 530, 532
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	4 cut(s)	90, 376, 606, 612
LmnI	GCTCC	3 cut(s)	98, 472, 511
Lsp1109I	GCAGC	6 cut(s)	98, 113, 559, 562, 565, 576
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	2 cut(s)	69, 180
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	4 cut(s)	92, 378, 608, 614
MboI	GATC	4 cut(s)	90, 376, 606, 612
MboII	GAAGA	2 cut(s)	406, 473
MhlI	GDGCHC	2 cut(s)	330, 516
MluCI	AATT	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	75, 137, 340, 434, 484
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	2 cut(s)	438, 669
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	4 cut(s)	35, 105, 273, 419
MspR9I	CCNGG	3 cut(s)	35, 386, 419
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	3 cut(s)	54, 530, 532
MwoI	GCNNNNNNNGC	2 cut(s)	278, 578
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	2 cut(s)	35, 419
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	4 cut(s)	90, 376, 606, 612
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	570
NlaIV	GGNNCC	3 cut(s)	297, 351, 513
NmeAIII	GCCGAG	1 cut(s)	382
PauI	GCGCGC	2 cut(s)	52, 530
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	313
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	6 cut(s)	88, 103, 574, 577, 580, 591
Ple19I	CGATCG	1 cut(s)	93
Ppu21I	YACGTR	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	297, 351, 513
PspPI	GGNCC	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	460
PteI	GCGCGC	2 cut(s)	52, 530
PvuI	CGATCG	1 cut(s)	93
RsaI	GTAC	3 cut(s)	264, 374, 416
RsaNI	GTAC	3 cut(s)	263, 373, 415
RseI	CAYNNNNRTG	1 cut(s)	47
SalI	GTCGAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	438, 669
SatI	GCNGC	6 cut(s)	87, 102, 573, 576, 579, 590
Sau3AI	GATC	4 cut(s)	90, 376, 606, 612
Sau96I	GGNCC	1 cut(s)	421
ScaI	AGTACT	1 cut(s)	264
ScrFI	CCNGG	3 cut(s)	35, 386, 419
SduI	GDGCHC	2 cut(s)	330, 516
SetI	ASST	8 cut(s)	72, 78, 115, 183, 351, 387, 414, 559
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	169, 173
StyD4I	CCNGG	3 cut(s)	33, 384, 417
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	4 cut(s)	233, 262, 372, 525
TaiI	ACGT	2 cut(s)	72, 183
TaqI	TCGA	1 cut(s)	308
TasI	AATT	1 cut(s)	15
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	438, 669
Tru9I	TTAA	2 cut(s)	438, 669
TseI	GCWGC	6 cut(s)	86, 101, 572, 575, 578, 589
TspDTI	ATGAA	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	421
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	15
XmiI	GTMKAC	3 cut(s)	72, 308, 562
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.