Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

50080576 .. 50089645

Gene Structure 9070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG250700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGACAATAAAAAGCCTGTACTTGTCAATGTTTTCACGGACAATAAGAAACTTCGAGACTCATTCAAACCATGTAGCATTAGCATATCAATCGATCACCAAAATTCAACAGAGATGGCCGAACCTGCGTTCAAGAAATTTGACATCGTTTCGGACCACTCAGACCACTACTACAGCACCGTGAAAAAGCATGGGAAAGGAAAGAACAACAACGGAGATGGACATAGTTTCATCAATGGCAGTACAGTCTACAAGAATATCATGCGCGAGTGGAAAATCTTGGAGAAGAACCTCCCAGACACCATCTACGTGCGCGCGTACGAGACCCGTGTCGACCTTATGAGGGCTGTGATTATCGGAGGCTCGGAGCAGCTGACACACCTTATCAGGATGGACTCTTCTTCTTTGACATCAAGTTTCCGCCGGACTACCCTGACCACCCACCCCATGTCTACTACCGATCGCATGGGACTCGTTCTCAATGAGAGACCCTATTATAACGAGGCGGGTCTGGGTTTTCTTGACAGGAATATCCTTAGACATCTTACAGAGTATCAATACAAAACTTACAACGCAAAGGCGTTTGTATTAACTTGCAAGTCGACGCTGTATTTGCTAAAAAATCCACCAAAGAATTTTGAGTCTTTCATCGCCGAACACTTTCGTCAGAGAGCCAGCGGCATACTGAGAGCGAGTGGTTTGTTAGAAGGATATTATGTGACCATGCGCATGCGTCTTTCAATTGGGGATTCACGATATACTTCAATGGAGCTTTTGTACCCAGAACTCGTCGAGGCTTTTAGAAAGAATGGTTGGGTGGAAGAGGACTTGTCGGTGGTAGAGGAGAGTTCAACGCAGTTGGCGGATCAAGTGGAGAGGAAAGCTAAGCTGCCCTTTTTATGGCTGTTTGGTCGTTTACCTTGGTTATCCTGGGTCGCTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

315

Amino Acids

36.42

Weight (kDa)

9.07

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
Acc16I	TGCGCA	1 cut(s)	728
Acc36I	ACCTGC	1 cut(s)	133
AccI	GTMKAC	4 cut(s)	249, 333, 452, 602
AccII	CGCG	3 cut(s)	267, 315, 317
AciI	CCGC	4 cut(s)	421, 506, 678, 863
AclWI	GGATC	1 cut(s)	873
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	103, 137, 634
AfaI	GTAC	4 cut(s)	21, 244, 320, 779
AfiI	CCNNNNNNNGG	2 cut(s)	343, 900
AgsI	TTSAA	6 cut(s)	67, 108, 133, 741, 765, 852
AjnI	CCWGG	1 cut(s)	929
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
AluBI	AGCT	4 cut(s)	373, 772, 884, 889
AluI	AGCT	4 cut(s)	373, 772, 884, 889
Alw26I	GTCTC	3 cut(s)	51, 317, 481
AlwI	GGATC	1 cut(s)	873
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	370, 889
ApoI	RAATTY	3 cut(s)	103, 137, 634
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	4 cut(s)	267, 315, 317, 729
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	382, 876
BccI	CCATC	4 cut(s)	109, 212, 311, 385
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 454, 488
BciT130I	CCWGG	1 cut(s)	931
BcoDI	GTCTC	3 cut(s)	51, 317, 481
BfmI	CTRYAG	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	371, 679, 890
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	3 cut(s)	372, 680, 891
Bme1390I	CCNGG	1 cut(s)	931
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	931
BoxI	GACNNNNGTC	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	885
Bsa29I	ATCGAT	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	310
BsaI	GGTCTC	2 cut(s)	317, 481
BsaJI	CCNNGG	2 cut(s)	920, 930
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 900
BseBI	CCWGG	1 cut(s)	931
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	920, 930
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	343, 900
BseMII	CTCAG	2 cut(s)	174, 677
BsePI	GCGCGC	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	857
BseXI	GCAGC	2 cut(s)	382, 876
Bsh1236I	CGCG	3 cut(s)	267, 315, 317
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	424
BsiWI	CGTACG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	343, 900
BsmAI	GTCTC	3 cut(s)	51, 317, 481
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	2 cut(s)	317, 481
Bsp143I	GATC	3 cut(s)	94, 460, 865
Bsp1720I	GCTNAGC	1 cut(s)	885
BspACI	CCGC	4 cut(s)	421, 506, 678, 863
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	173, 678
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	3 cut(s)	267, 315, 317
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	873
BspTNI	GGTCTC	2 cut(s)	317, 481
BssECI	CCNNGG	2 cut(s)	920, 930
BssHII	GCGCGC	1 cut(s)	313
BssMI	GATC	3 cut(s)	94, 460, 865
BssT1I	CCWWGG	1 cut(s)	920
Bst2UI	CCWGG	1 cut(s)	931
Bst4CI	ACNGT	2 cut(s)	181, 247
Bst6I	CTCTTC	2 cut(s)	403, 816
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	315, 676, 731
BstDEI	CTNAG	4 cut(s)	160, 536, 686, 885
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	3 cut(s)	267, 315, 317
BstHHI	GCGC	4 cut(s)	267, 315, 317, 729
BstKTI	GATC	3 cut(s)	97, 463, 868
BstMAI	GTCTC	3 cut(s)	51, 317, 481
BstMBI	GATC	3 cut(s)	94, 460, 865
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 613
BstNI	CCWGG	1 cut(s)	931
BstNSI	RCATGY	1 cut(s)	733
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	929
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	3 cut(s)	267, 315, 317
BstV1I	GCAGC	2 cut(s)	382, 876
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	396
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	315, 676, 731
CfoI	GCGC	4 cut(s)	267, 315, 317, 729
Cfr13I	GGNCC	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	2 cut(s)	613, 722
Csp6I	GTAC	4 cut(s)	20, 243, 319, 778
CviAII	CATG	7 cut(s)	72, 191, 262, 448, 466, 724, 730
CviQI	GTAC	4 cut(s)	20, 243, 319, 778
DdeI	CTNAG	4 cut(s)	160, 536, 686, 885
DpnI	GATC	3 cut(s)	96, 462, 867
DpnII	GATC	3 cut(s)	94, 460, 865
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	403, 816
EarI	CTCTTC	2 cut(s)	403, 816
EciI	GGCGGA	2 cut(s)	410, 878
Eco130I	CCWWGG	1 cut(s)	920
Eco31I	GGTCTC	2 cut(s)	317, 481
Eco47I	GGWCC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	929
EcoT14I	CCWWGG	1 cut(s)	920
ErhI	CCWWGG	1 cut(s)	920
FaeI	CATG	7 cut(s)	75, 194, 265, 451, 469, 727, 733
FalI	AAGNNNNNCTT	2 cut(s)	878, 910
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	7 cut(s)	71, 190, 261, 447, 465, 723, 729
FauI	CCCGC	1 cut(s)	499
FblI	GTMKAC	4 cut(s)	249, 333, 452, 602
Fnu4HI	GCNGC	3 cut(s)	371, 679, 890
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	371, 679, 890
FspAI	RTGCGCAY	1 cut(s)	728
FspI	TGCGCA	1 cut(s)	728
GlaI	GCGC	4 cut(s)	266, 314, 316, 728
GluI	GCNGC	3 cut(s)	371, 679, 890
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	424
HgaI	GACGC	2 cut(s)	613, 722
HhaI	GCGC	4 cut(s)	267, 315, 317, 729
Hin1II	CATG	7 cut(s)	75, 194, 265, 451, 469, 727, 733
Hin6I	GCGC	4 cut(s)	265, 313, 315, 727
HinP1I	GCGC	4 cut(s)	265, 313, 315, 727
HincII	GTYRAC	2 cut(s)	334, 603
HindII	GTYRAC	2 cut(s)	334, 603
HinfI	GANTC	5 cut(s)	59, 395, 471, 641, 749
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	5 cut(s)	250, 334, 453, 603, 917
Hpy188I	TCNGA	5 cut(s)	154, 163, 359, 367, 669
Hpy188III	TCNNGA	5 cut(s)	56, 133, 388, 521, 753
Hpy8I	GTNNAC	5 cut(s)	250, 334, 453, 603, 917
Hpy99I	CGWCG	2 cut(s)	607, 794
HpyAV	CCTTC	1 cut(s)	701
HpyCH4III	ACNGT	2 cut(s)	181, 247
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 613
HpyF3I	CTNAG	4 cut(s)	160, 536, 686, 885
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	7 cut(s)	75, 194, 265, 451, 469, 727, 733
HspAI	GCGC	4 cut(s)	265, 313, 315, 727
Kzo9I	GATC	3 cut(s)	94, 460, 865
LmnI	GCTCC	2 cut(s)	367, 769
Lsp1109I	GCAGC	2 cut(s)	382, 876
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	3 cut(s)	96, 462, 867
MboI	GATC	3 cut(s)	94, 460, 865
MboII	GAAGA	4 cut(s)	298, 390, 393, 833
MfeI	CAATTG	1 cut(s)	741
MluCI	AATT	4 cut(s)	103, 137, 634, 741
MlyI	GAGTC	4 cut(s)	53, 389, 465, 650
MnlI	CCTC	8 cut(s)	302, 336, 353, 496, 787, 817, 835, 870
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	2 cut(s)	308, 728
MspA1I	CMGCKG	2 cut(s)	373, 678
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	931
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	931
MvnI	CGCG	3 cut(s)	267, 315, 317
MwoI	GCNNNNNNNGC	2 cut(s)	125, 613
NdeII	GATC	3 cut(s)	94, 460, 865
NlaIII	CATG	7 cut(s)	75, 194, 265, 451, 469, 727, 733
NmuCI	GTSAC	1 cut(s)	718
NsbI	TGCGCA	1 cut(s)	728
NspI	RCATGY	1 cut(s)	733
PaeI	GCATGC	1 cut(s)	733
PauI	GCGCGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	1 cut(s)	749
Pfl23II	CGTACG	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	372, 680, 891
Ple19I	CGATCG	1 cut(s)	463
PleI	GAGTC	4 cut(s)	53, 389, 465, 649
PpsI	GAGTC	4 cut(s)	53, 389, 465, 649
Ppu21I	YACGTR	1 cut(s)	310
PshAI	GACNNNNGTC	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	929
PspGI	CCWGG	1 cut(s)	929
PspLI	CGTACG	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	154
PteI	GCGCGC	1 cut(s)	313
PvuI	CGATCG	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	4 cut(s)	21, 244, 320, 779
RsaNI	GTAC	4 cut(s)	20, 243, 319, 778
RseI	CAYNNNNRTG	2 cut(s)	308, 728
SalI	GTCGAC	2 cut(s)	332, 601
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	3 cut(s)	371, 679, 890
Sau3AI	GATC	3 cut(s)	94, 460, 865
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	4 cut(s)	53, 389, 465, 650
ScrFI	CCNGG	1 cut(s)	931
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	308, 728
SphI	GCATGC	1 cut(s)	733
Sse9I	AATT	4 cut(s)	103, 137, 634, 741
SsiI	CCGC	4 cut(s)	421, 506, 678, 863
StyD4I	CCNGG	1 cut(s)	929
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	2 cut(s)	181, 247
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	5 cut(s)	55, 93, 333, 602, 792
TasI	AATT	4 cut(s)	103, 137, 634, 741
TatI	WGTACW	2 cut(s)	19, 242
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	2 cut(s)	370, 889
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	2 cut(s)	220, 637
TspGWI	ACGGA	2 cut(s)	53, 228
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	3 cut(s)	103, 137, 634
XceI	RCATGY	1 cut(s)	733
XmiI	GTMKAC	4 cut(s)	249, 333, 452, 602
XmnI	GAANNNNTTC	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.