Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

35411531 .. 35412010

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCAATCCCTAGTTCATCATATGATATCTATTATGGTTTTATGTTTATGGAGCTTGAGTACTACACCAGCAGTAGCAGCAGAATCAGGAACAGCGCTGCCGATAGCAAAGCCGAATTGCCAAGAGAAATGCGGAAATGTCAGCATCCCGTACCCTTTCGGGATCGGGCCTGATAAAGATTGCTACCTTGAAGAGTGGTTTGAAATAGACTGCAACCAGTCTACTAGGCACAAGCCTTTCTTGAGGCTTACACAACAGGAGGTGTTGAGCATTTCTATCAAAGACGCCACGCTTCAGGTGAACAGCCCCGTTACTTTCTTCTGCAACGTAACAGGAAGTAGCCAGCCCGCAAATCTGATCGGAAGCCCTTTCGTGTACTCTCAGAGACAAAACAGATTCACCGCAGCGACTTGCGGCTTTGTCTCCTTGGTGAGCTCAGATCAATCGGTGGTTGGTGGGTGCAGGTCAATTAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

159

Amino Acids

17.33

Weight (kDa)

6.25

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	40 - 101	1.3e-14	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	4 cut(s)	132, 348, 402, 414
AclWI	GGATC	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	3 cut(s)	61, 152, 377
AfeI	AGCGCT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	191, 203
AluBI	AGCT	2 cut(s)	54, 435
AluI	AGCT	2 cut(s)	54, 435
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	2 cut(s)	379, 427
AlwI	GGATC	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	3 cut(s)	77, 97, 404
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	310, 391, 442
BanII	GRGCYC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	84, 89, 416
BcoDI	GTCTC	2 cut(s)	379, 427
BfaI	CTAG	2 cut(s)	11, 225
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	4 cut(s)	78, 98, 405, 415
BlsI	GCNGC	4 cut(s)	79, 99, 406, 416
BmcAI	AGTACT	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	167
BmsI	GCATC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	76, 262
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	395, 450
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	84, 89, 416
BshFI	GGCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	379, 427
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	162, 357, 439
BspACI	CCGC	4 cut(s)	132, 348, 402, 414
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	394, 449
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	162, 357, 439
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	344, 348
BstDEI	CTNAG	2 cut(s)	381, 436
BstF5I	GGATG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	3 cut(s)	165, 360, 442
BstMAI	GTCTC	2 cut(s)	379, 427
BstMBI	GATC	3 cut(s)	162, 357, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	84, 89, 416
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	344, 348
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	3 cut(s)	60, 151, 376
CviQI	GTAC	3 cut(s)	60, 151, 376
DdeI	CTNAG	2 cut(s)	381, 436
DpnI	GATC	3 cut(s)	164, 359, 441
DpnII	GATC	3 cut(s)	162, 357, 439
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	426
FaiI	YATR	5 cut(s)	21, 23, 35, 43, 49
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	4 cut(s)	78, 98, 405, 415
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	78, 98, 405, 415
FspBI	CTAG	2 cut(s)	11, 225
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	4 cut(s)	78, 98, 405, 415
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	169
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	2 cut(s)	83, 396
HphI	GGTGA	3 cut(s)	310, 391, 442
Hpy166II	GTNNAC	3 cut(s)	222, 301, 376
Hpy188I	TCNGA	4 cut(s)	357, 362, 384, 439
Hpy188III	TCNNGA	3 cut(s)	87, 160, 241
Hpy8I	GTNNAC	3 cut(s)	222, 301, 376
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	4 cut(s)	4, 213, 324, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	381, 436
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	162, 357, 439
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	9 cut(s)	72, 81, 183, 230, 242, 281, 318, 356, 448
Lsp1109I	GCAGC	3 cut(s)	84, 89, 416
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	11, 225
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	310, 328
MalI	GATC	3 cut(s)	164, 359, 441
MboI	GATC	3 cut(s)	162, 357, 439
MboII	GAAGA	2 cut(s)	203, 310
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	3 cut(s)	115, 468, 472
MnlI	CCTC	2 cut(s)	237, 253
MseI	TTAA	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	3 cut(s)	162, 357, 439
PfeI	GAWTC	2 cut(s)	83, 396
PkrI	GCNGC	4 cut(s)	79, 99, 406, 416
PshBI	ATTAAT	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	3 cut(s)	61, 152, 377
RsaNI	GTAC	3 cut(s)	60, 151, 376
SacI	GAGCTC	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	78, 98, 405, 415
Sau3AI	GATC	3 cut(s)	162, 357, 439
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	7 cut(s)	56, 189, 264, 300, 330, 437, 467
SfaNI	GCATC	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	55, 241
SmoI	CTYRAG	2 cut(s)	55, 241
Sse9I	AATT	3 cut(s)	115, 468, 472
SsiI	CCGC	4 cut(s)	132, 348, 402, 414
SspMI	CTAG	2 cut(s)	11, 225
SstI	GAGCTC	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	426
TaiI	ACGT	1 cut(s)	330
TasI	AATT	3 cut(s)	115, 468, 472
TatI	WGTACW	2 cut(s)	59, 375
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	83, 396
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseI	GCWGC	3 cut(s)	77, 97, 404
TspDTI	ATGAA	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	2 cut(s)	11, 225
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.