Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

53505249 .. 53505827

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG277900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGGGATCCAAATCAGTCGACTATCCTCCAAGTGCTGGTGTCTATACAAGGACTGGTTCTGAACGAAAAGCCCTTCTATAATGAACCCTTTCGTCTCCGTATCTTTCAGGAGGAGAACTCCCATCGTTACAATGAGGACGCGTTTATCAAAACGTGCAAGACGACGTTGTATTTGCTCCAAAAACCGCCCAAGAATTTTGAGCTTTTCACCGCCGACCATTTTCGACAGAGAGCAAACCGGATACTGAGAGCTTGTAACGCTTACACTAACAGTCGTGTGGGAGTCGGGCACTACAGAGATGACAATGAAAATGTAACTAAGGATGACACTAAAGTTAAGGACTCTGCAATTTCAGTTCACCCTGTTTCGACGACATTTATTGATTCGATGGAACAGTTGTACCCGAAACTCGTTGTGGTTTTTAGATGGAATAAGGCCTCAAATTTGGTCGAGCACTTGAATTTGGAGAACGTTACGACGCCGCGGGGGGCTGCAGGCATGCTTTGTCGTCCTTATTGTCTTCTGCTTTGTTGTGCATTAGTAGCACTGATTTGTTACTTCATGTTTAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

192

Amino Acids

22.27

Weight (kDa)

8.67

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	2 cut(s)	143, 487
AciI	CCGC	4 cut(s)	188, 213, 485, 487
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	2 cut(s)	2, 15
AcsI	RAATTY	3 cut(s)	196, 445, 463
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	463
AluBI	AGCT	2 cut(s)	205, 254
AluI	AGCT	2 cut(s)	205, 254
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	2, 15
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	3 cut(s)	196, 445, 463
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
Asp700I	GAANNNNTTC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	202, 353
BaeGI	GKGCMC	1 cut(s)	294
BaeI	ACNNNNGTAYC	2 cut(s)	386, 419
BamHI	GGATCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	3 cut(s)	132, 385, 423
BciVI	GTATCC	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	295, 495
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	485, 495
BlsI	GCNGC	2 cut(s)	486, 496
BmiI	GGNNCC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	515
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	481
Bsh1236I	CGCG	2 cut(s)	143, 487
BshFI	GGCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	294, 459
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	4 cut(s)	188, 213, 485, 487
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	2 cut(s)	143, 487
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	2, 15
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	275, 399
BstACI	GRCGYC	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	499, 503
BstDEI	CTNAG	3 cut(s)	248, 321, 576
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	2 cut(s)	143, 487
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 545
BstNSI	RCATGY	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	295, 495
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	2 cut(s)	143, 487
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	499, 503
Cfr42I	CCGCGG	1 cut(s)	488
CseI	GACGC	2 cut(s)	149, 490
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	502, 565
CviJI	RGCY	6 cut(s)	73, 205, 254, 440, 494, 575
CviKI_1	RGCY	6 cut(s)	73, 205, 254, 440, 494, 575
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	3 cut(s)	248, 321, 576
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	505, 568
FaiI	YATR	4 cut(s)	47, 81, 503, 566
FatI	CATG	2 cut(s)	501, 564
FauI	CCCGC	1 cut(s)	480
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	485, 495
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	485, 495
GluI	GCNGC	2 cut(s)	485, 495
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	2 cut(s)	149, 490
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	505, 568
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	3 cut(s)	285, 344, 386
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	202, 353
Hpy166II	GTNNAC	2 cut(s)	21, 361
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	21, 361
Hpy99I	CGWCG	3 cut(s)	169, 376, 484
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	275, 399
HpyCH4IV	ACGT	3 cut(s)	155, 167, 474
HpyCH4V	TGCA	4 cut(s)	159, 350, 497, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 545
HpyF3I	CTNAG	3 cut(s)	248, 321, 576
HpySE526I	ACGT	3 cut(s)	155, 167, 474
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	2 cut(s)	505, 568
KspI	CCGCGG	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	6 cut(s)	23, 41, 95, 254, 378, 483
Lsp1109I	GCAGC	1 cut(s)	481
MaeII	ACGT	3 cut(s)	155, 167, 474
MaeIII	GTNAC	5 cut(s)	128, 257, 316, 475, 557
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	515
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	294, 459
MluCI	AATT	4 cut(s)	196, 351, 445, 463
MluI	ACGCGT	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	294, 338
MnlI	CCTC	4 cut(s)	38, 106, 130, 451
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	1 cut(s)	241
MvnI	CGCG	2 cut(s)	143, 487
MwoI	GCNNNNNNNGC	2 cut(s)	260, 545
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	505, 568
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	486, 496
PleI	GAGTC	2 cut(s)	293, 338
PpsI	GAGTC	2 cut(s)	293, 338
Psp1406I	AACGTT	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SacII	CCGCGG	1 cut(s)	488
SalI	GTCGAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	485, 495
Sau3AI	GATC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	294, 338
SduI	GDGCHC	2 cut(s)	294, 459
SetI	ASST	5 cut(s)	158, 170, 207, 256, 477
SfcI	CTRYAG	2 cut(s)	295, 495
Sfr303I	CCGCGG	1 cut(s)	488
SgrBI	CCGCGG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	4 cut(s)	196, 351, 445, 463
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	4 cut(s)	188, 213, 485, 487
StuI	AGGCCT	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	275, 399
TaiI	ACGT	3 cut(s)	158, 170, 477
TaqI	TCGA	5 cut(s)	20, 226, 371, 389, 453
TasI	AATT	4 cut(s)	196, 351, 445, 463
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	555
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	3 cut(s)	99, 324, 553
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	555
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	3 cut(s)	196, 445, 463
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.