Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

43973742 .. 43977513

Gene Structure 3772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0289400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGTCGATGGAGGGTTCGACTAGGCTCGGGCCAAGAGGCCTAATAAAGAAGCATGAGTTTGTAAGAATAATAATTCAGTGCCTATATTCGATGGGCTATGGGAAGGCCGCTTCATGCTCAGAGTTGGAGTCTGGCATTGCTTGCCAATCTGATTATTTTCAGATGCTGGAATCGAAGATATTGAGCGGGAATTGGAATGATTGTATTGATATCCTTAATGCCATTAAGGATTTGACAGAAGAAACAAGAGCTACTGCTTTGTTTCTAGTATTCAAACAGTCACTTTTGGAGTATTCAAAGTGCGGGGATGACAAGATGGCTTTAGACATTTTGCAGAAAGAGGTTTCAGCATTACAGGTGGGCAGAGATAAGGTTCACAACCTGGCTCACAGTATCCTTTTCTCGAAGGATATGGAGCAGGGTAAGATGGACAACAATGAGGTTTGCGAATTGCGAAAAAAGCTGTTGCAAGAATTGCAAAATTTGCTTCCTCCACCAATTACACTACCTCCGCGCAGGTTGGAACATCTGGTTGAAACTGCTGTTTTGACCCAGATTGATTCATGTATGTATCATAATTTTTCGGATGCTGTTTCACTTTATGCAGACCATTTGTGTGGTAGGGATCAGATCCCTACTGAGACTGTACAGATTTTGACTGAGCATAAGGACGAAGTTTGGTTTGTACAATTTTCTCATAATGGGGAGTACTTAGCTTCTTCATCAAGTGATTGCACGGCCATCATATGGAAGGTGCTGGAAGACGGCAGCGTGATATTAAAACATACCCTATGGAGCCACCTTAAACCAGTATCCTTTGTGGCATGGAGCCCCGATGACTCAAAGTTGCTTACGTGTGGAAATGGTGAAGTCCTCAAGCTATGGGATGTGGAAACAGGTACATGCAAGCATACATTTGGAGATCATGGCTTCATTGTCAGCTCATGTGCTTGGTTTCCCGACTCAAAGCGACTTGTGTGTGGCAGTTCTGACCCTGAAAAAGGTATCTACATGTGGGATTGCGATGGCAACGAGTTAAAAGCATGGAGAGGTATGAGGATGCCCAAGATTTTAGATCTTGCTGTAACACCAGATGGGGAAAATCTTATCAGCATTTTCTCTGATAAAGAAATTCGGATTTTGAATGTGGGAACAAATGCTGAGCGAGTTATCTCTGAAGACCATTCTATCACATCCCTCTCAATTTCTAGAGATAGTGAGTACTTTATCGTCAACCTAAATAGCCAGGAGATCCATATGTGGGATGTTGCTGGGAAACTGGAGAAGCCACTGAAGTATATGGGTCACAGGCAGAGCAAATACGTAATACGCTCCTGCTTCGGTGGAGTGAATAGTACATTTATTGCCAGCGGTAGTGAGAACTCACAGGTCTACATTTGGAATCGGCGAAACTCTATGCCAATTGAAGTTTTGTGTGGGCATTCAATGACTGTGAACTGTGTGAGTTGGAATCTTAGGAGACCTCAAATGCTGGCATCGGCTAGTGATGATCATACTATCCATATATGGGGATCTAGTCTATCTAAAAAGACTCAACCTGAGAAACTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

524

Amino Acids

59.1

Weight (kDa)

5.79

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_WDR26	PF23627	7 - 50	2.9e-19	WDR26 Lis-homology motif
Beta-prop_CAF1B_HIR1	PF24105	208 - 337	2.6e-12	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	214 - 336	1.6e-21	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	214 - 380	6.9e-21	CDC20/Fizzy WD40 domain
Beta-prop_EML	PF23409	214 - 387	2.5e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin	PF25460	214 - 331	1.1e-12	Aladin seven-bladed propeller
Beta-prop_TEP1_2nd	PF25047	214 - 349	1.3e-10	TEP-1 second beta-propeller
WDR55	PF24796	214 - 331	8.1e-08	WDR55
Beta-prop_IFT122_1st	PF23381	215 - 328	1.5e-06	IFT122 first beta-propeller
WD40	PF00400	215 - 250	1.6e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	219 - 510	6e-48	WDR5 beta-propeller domain
EIF3I	PF24805	219 - 411	2.1e-06	EIF3I
Beta-prop_WDR3_2nd	PF25172	221 - 382	1.5e-11	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	222 - 424	3e-28	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	228 - 335	2.1e-08	G protein beta WD-40 repeat protein
Beta-prop_EML_2	PF23414	274 - 425	3.8e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	277 - 425	4.5e-10	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	351 - 471	9.9e-06	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	359 - 514	1.8e-07	WDHD1 first WD40 domain
Beta-prop_WDR19_1st	PF23389	365 - 510	5.4e-07	WDR19 first beta-propeller
Beta-prop_WDR3_1st	PF25173	386 - 511	8.7e-13	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	392 - 514	9.2e-12	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	451 - 514	1.8e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	451 - 519	4.8e-11	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	507
AccB7I	CCANNNNNTGG	1 cut(s)	747
AccBSI	CCGCTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	1392
AccII	CGCG	1 cut(s)	514
AciI	CCGC	5 cut(s)	108, 186, 303, 512, 1371
AclWI	GGATC	4 cut(s)	625, 633, 1246, 1540
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	2 cut(s)	481, 1131
AcuI	CTGAAG	2 cut(s)	1197, 1313
AfaI	GTAC	6 cut(s)	648, 687, 710, 901, 1223, 1357
AfiI	CCNNNNNNNGG	4 cut(s)	747, 1001, 1261, 1528
AflIII	ACRYGT	2 cut(s)	854, 1011
AgsI	TTSAA	6 cut(s)	274, 297, 536, 1144, 1427, 1446
AjnI	CCWGG	2 cut(s)	381, 1245
AluBI	AGCT	5 cut(s)	251, 463, 716, 880, 942
AluI	AGCT	5 cut(s)	251, 463, 716, 880, 942
Alw26I	GTCTC	2 cut(s)	635, 1474
AlwI	GGATC	4 cut(s)	625, 633, 1246, 1540
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	4 cut(s)	29, 37, 105, 738
ApeKI	GCWGC	1 cut(s)	768
ApoI	RAATTY	2 cut(s)	481, 1131
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	878
AvaI	CYCGRG	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	833
BbsI	GAAGAC	2 cut(s)	768, 1185
BbvI	GCAGC	1 cut(s)	780
BccI	CCATC	6 cut(s)	85, 310, 421, 749, 1019, 1088
BceAI	ACGGC	2 cut(s)	753, 781
BciT130I	CCWGG	2 cut(s)	383, 1247
BciVI	GTATCC	2 cut(s)	404, 823
BclI	TGATCA	1 cut(s)	1510
BcoDI	GTCTC	2 cut(s)	635, 1474
BfaI	CTAG	5 cut(s)	21, 266, 1209, 1503, 1536
BfuAI	ACCTGC	1 cut(s)	507
BfuI	GTATCC	2 cut(s)	404, 823
BglII	AGATCT	1 cut(s)	1075
BisI	GCNGC	2 cut(s)	108, 769
BlpI	GCTNAGC	1 cut(s)	1161
BlsI	GCNGC	2 cut(s)	109, 770
BmcAI	AGTACT	2 cut(s)	710, 1223
Bme1390I	CCNGG	2 cut(s)	383, 1247
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	797, 830
BmrFI	CCNGG	2 cut(s)	383, 1247
BmsI	GCATC	4 cut(s)	153, 577, 1050, 1505
BpiI	GAAGAC	2 cut(s)	768, 1185
BpmI	CTGGAG	1 cut(s)	1301
Bpu1102I	GCTNAGC	1 cut(s)	1161
BpuEI	CTTGAG	1 cut(s)	860
BsaAI	YACGTR	2 cut(s)	855, 1324
BsaI	GGTCTC	1 cut(s)	1474
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	4 cut(s)	747, 1001, 1261, 1528
Bse1I	ACTGG	2 cut(s)	809, 1284
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	383, 1247
BseGI	GGATG	6 cut(s)	313, 592, 892, 1065, 1193, 1270
BseLI	CCNNNNNNNGG	4 cut(s)	747, 1001, 1261, 1528
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	5 cut(s)	132, 630, 651, 1152, 1551
BseNI	ACTGG	2 cut(s)	809, 1284
BseXI	GCAGC	1 cut(s)	780
BseYI	CCCAGC	1 cut(s)	1271
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	4 cut(s)	31, 39, 107, 740
BsiHKCI	CYCGRG	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	747, 1001, 1261, 1528
BsmAI	GTCTC	2 cut(s)	635, 1474
BsmI	GAATGC	1 cut(s)	1441
BsnI	GGCC	4 cut(s)	31, 39, 107, 740
Bso31I	GGTCTC	1 cut(s)	1474
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	833
Bsp1407I	TGTACA	2 cut(s)	646, 685
Bsp143I	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
Bsp1720I	GCTNAGC	1 cut(s)	1161
BspACI	CCGC	5 cut(s)	108, 186, 303, 512, 1371
BspANI	GGCC	4 cut(s)	31, 39, 107, 740
BspCNI	CTCAG	5 cut(s)	131, 631, 652, 1153, 1552
BspFNI	CGCG	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	797, 830
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	4 cut(s)	625, 633, 1246, 1540
BspTNI	GGTCTC	1 cut(s)	1474
BsrBI	CCGCTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	2 cut(s)	646, 685
BsrI	ACTGG	2 cut(s)	809, 1284
BssMI	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
Bst2UI	CCWGG	2 cut(s)	383, 1247
Bst4CI	ACNGT	5 cut(s)	279, 392, 646, 1453, 1460
BstAPI	GCANNNNNTGC	3 cut(s)	141, 475, 484
BstAUI	TGTACA	2 cut(s)	646, 685
BstBAI	YACGTR	2 cut(s)	855, 1324
BstC8I	GCNNGC	4 cut(s)	142, 908, 1369, 1494
BstDEI	CTNAG	8 cut(s)	118, 639, 660, 712, 1161, 1475, 1560, 1568
BstENI	CCTNNNNNAGG	1 cut(s)	999
BstF5I	GGATG	6 cut(s)	313, 592, 892, 1065, 1193, 1270
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	7 cut(s)	628, 633, 925, 1078, 1254, 1513, 1535
BstMAI	GTCTC	2 cut(s)	635, 1474
BstMBI	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 460, 475, 484
BstNI	CCWGG	2 cut(s)	383, 1247
BstNSI	RCATGY	2 cut(s)	906, 1015
BstSCI	CCNGG	2 cut(s)	381, 1245
BstSNI	TACGTA	1 cut(s)	1324
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	780
BstV2I	GAAGAC	2 cut(s)	768, 1185
BstX2I	RGATCY	4 cut(s)	630, 1075, 1251, 1532
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	4 cut(s)	630, 1075, 1251, 1532
BsuI	GTATCC	2 cut(s)	404, 823
BsuRI	GGCC	4 cut(s)	31, 39, 107, 740
BtgZI	GCGATG	1 cut(s)	1038
BtsCI	GGATG	6 cut(s)	313, 592, 892, 1065, 1193, 1270
BtsIMutI	CAGTG	2 cut(s)	83, 1289
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	4 cut(s)	142, 908, 1369, 1494
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	6 cut(s)	647, 686, 709, 900, 1222, 1356
CviAII	CATG	9 cut(s)	53, 114, 564, 825, 903, 926, 945, 1012, 1044
CviQI	GTAC	6 cut(s)	647, 686, 709, 900, 1222, 1356
DdeI	CTNAG	8 cut(s)	118, 639, 660, 712, 1161, 1475, 1560, 1568
DpnI	GATC	7 cut(s)	627, 632, 924, 1077, 1253, 1512, 1534
DpnII	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
EaeI	YGGCCR	1 cut(s)	738
Eco105I	TACGTA	1 cut(s)	1324
Eco147I	AGGCCT	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	833
Eco31I	GGTCTC	1 cut(s)	1474
Eco32I	GATATC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	1197, 1313
Eco88I	CYCGRG	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	999
EcoRII	CCWGG	2 cut(s)	381, 1245
EcoRV	GATATC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	833
FaeI	CATG	9 cut(s)	56, 117, 567, 828, 906, 929, 948, 1015, 1047
FatI	CATG	9 cut(s)	52, 113, 563, 824, 902, 925, 944, 1011, 1043
FauI	CCCGC	2 cut(s)	179, 296
FauNDI	CATATG	2 cut(s)	746, 1257
FbaI	TGATCA	1 cut(s)	1510
FblI	GTMKAC	1 cut(s)	1392
Fnu4HI	GCNGC	2 cut(s)	108, 769
FokI	GGATG	6 cut(s)	320, 599, 899, 1072, 1180, 1277
FriOI	GRGCYC	1 cut(s)	833
Fsp4HI	GCNGC	2 cut(s)	108, 769
FspBI	CTAG	5 cut(s)	21, 266, 1209, 1503, 1536
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	2 cut(s)	108, 769
GsaI	CCCAGC	1 cut(s)	1275
GsuI	CTGGAG	1 cut(s)	1301
HaeIII	GGCC	4 cut(s)	31, 39, 107, 740
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	9 cut(s)	56, 117, 567, 828, 906, 929, 948, 1015, 1047
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	1234
HindII	GTYRAC	1 cut(s)	1234
HinfI	GANTC	8 cut(s)	128, 170, 560, 839, 962, 1402, 1471, 1552
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	4 cut(s)	376, 1234, 1393, 1456
Hpy188I	TCNGA	9 cut(s)	121, 151, 162, 586, 630, 991, 1123, 1137, 1177
Hpy188III	TCNNGA	3 cut(s)	403, 959, 1209
Hpy8I	GTNNAC	4 cut(s)	376, 1234, 1393, 1456
HpyAV	CCTTC	3 cut(s)	97, 400, 745
HpyCH4III	ACNGT	5 cut(s)	279, 392, 646, 1453, 1460
HpyCH4IV	ACGT	2 cut(s)	854, 1323
HpyCH4V	TGCA	6 cut(s)	334, 469, 478, 605, 735, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 460, 475, 484
HpyF3I	CTNAG	8 cut(s)	118, 639, 660, 712, 1161, 1475, 1560, 1568
HpySE526I	ACGT	2 cut(s)	854, 1323
Hsp92II	CATG	9 cut(s)	56, 117, 567, 828, 906, 929, 948, 1015, 1047
HspAI	GCGC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	1510
Kzo9I	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
LmnI	GCTCC	4 cut(s)	415, 795, 828, 1337
Lsp1109I	GCAGC	1 cut(s)	780
LweI	GCATC	4 cut(s)	153, 577, 1050, 1505
MaeI	CTAG	5 cut(s)	21, 266, 1209, 1503, 1536
MaeII	ACGT	2 cut(s)	854, 1323
MaeIII	GTNAC	3 cut(s)	279, 1084, 1304
MalI	GATC	7 cut(s)	627, 632, 924, 1077, 1253, 1512, 1534
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
MboII	GAAGA	5 cut(s)	187, 251, 711, 773, 1190
MfeI	CAATTG	1 cut(s)	1422
MflI	RGATCY	4 cut(s)	630, 1075, 1251, 1532
MhlI	GDGCHC	1 cut(s)	833
MlyI	GAGTC	4 cut(s)	137, 833, 956, 1546
MmeI	TCCRAC	3 cut(s)	105, 501, 1448
MseI	TTAA	5 cut(s)	216, 225, 779, 804, 1037
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	1371
MspR9I	CCNGG	2 cut(s)	383, 1247
MunI	CAATTG	1 cut(s)	1422
Mva1269I	GAATGC	1 cut(s)	1441
MvaI	CCWGG	2 cut(s)	383, 1247
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	4 cut(s)	141, 460, 475, 484
NdeI	CATATG	2 cut(s)	746, 1257
NdeII	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
NlaIII	CATG	9 cut(s)	56, 117, 567, 828, 906, 929, 948, 1015, 1047
NlaIV	GGNNCC	2 cut(s)	797, 830
NmuCI	GTSAC	2 cut(s)	279, 1304
NspI	RCATGY	2 cut(s)	906, 1015
PceI	AGGCCT	1 cut(s)	39
PciI	ACATGT	1 cut(s)	1011
PctI	GAATGC	1 cut(s)	1441
PfeI	GAWTC	4 cut(s)	170, 560, 1402, 1471
PflMI	CCANNNNNTGG	1 cut(s)	747
PkrI	GCNGC	2 cut(s)	109, 770
PleI	GAGTC	4 cut(s)	136, 833, 956, 1546
PpsI	GAGTC	4 cut(s)	136, 833, 956, 1546
Ppu21I	YACGTR	2 cut(s)	855, 1324
PscI	ACATGT	1 cut(s)	1011
Psp6I	CCWGG	2 cut(s)	381, 1245
PspFI	CCCAGC	1 cut(s)	1271
PspGI	CCWGG	2 cut(s)	381, 1245
PspN4I	GGNNCC	2 cut(s)	797, 830
PspPI	GGNCC	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	4 cut(s)	630, 1075, 1251, 1532
RsaI	GTAC	6 cut(s)	648, 687, 710, 901, 1223, 1357
RsaNI	GTAC	6 cut(s)	647, 686, 709, 900, 1222, 1356
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	216, 225, 779, 804, 1037
SatI	GCNGC	2 cut(s)	108, 769
Sau3AI	GATC	7 cut(s)	625, 630, 922, 1075, 1251, 1510, 1532
Sau96I	GGNCC	1 cut(s)	29
ScaI	AGTACT	2 cut(s)	710, 1223
SchI	GAGTC	4 cut(s)	137, 833, 956, 1546
ScrFI	CCNGG	2 cut(s)	383, 1247
SduI	GDGCHC	1 cut(s)	833
SfaNI	GCATC	4 cut(s)	153, 577, 1050, 1505
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
SnaBI	TACGTA	1 cut(s)	1324
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	5 cut(s)	108, 186, 303, 512, 1371
SspMI	CTAG	5 cut(s)	21, 266, 1209, 1503, 1536
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	381, 1245
TaaI	ACNGT	5 cut(s)	279, 392, 646, 1453, 1460
TaiI	ACGT	2 cut(s)	857, 1326
TaqI	TCGA	5 cut(s)	5, 17, 89, 173, 404
TatI	WGTACW	5 cut(s)	646, 685, 708, 1221, 1355
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	4 cut(s)	170, 560, 1402, 1471
Tru1I	TTAA	5 cut(s)	216, 225, 779, 804, 1037
Tru9I	TTAA	5 cut(s)	216, 225, 779, 804, 1037
TscAI	CASTG	2 cut(s)	83, 1296
TseFI	GTSAC	2 cut(s)	279, 1304
TseI	GCWGC	1 cut(s)	768
Tsp45I	GTSAC	2 cut(s)	279, 1304
TspDTI	ATGAA	4 cut(s)	102, 552, 711, 922
TspRI	CASTG	2 cut(s)	83, 1296
Van91I	CCANNNNNTGG	1 cut(s)	747
XagI	CCTNNNNNAGG	1 cut(s)	999
XapI	RAATTY	2 cut(s)	481, 1131
XbaI	TCTAGA	1 cut(s)	1208
XceI	RCATGY	2 cut(s)	906, 1015
XmiI	GTMKAC	1 cut(s)	1392
XspI	CTAG	5 cut(s)	21, 266, 1209, 1503, 1536
ZrmI	AGTACT	2 cut(s)	710, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.