Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

49317233 .. 49318186

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCTCCCTTAGTGGAGAGCTTCCACAGATTCGACGTCGTCTCGGACCATTCAGACCACCACTACAGCAACACTGACGGGAACGGAAACAGTTTCACCTACTGTGGAAGCACAGTGTACAAGAAGATCATGCGCGAGTGGAAAATTCTAAGAAAGCACCTCCCGGACTCGACCTATGTGCGAGTGTACAACACTCGAATCGACCTACTGAGGGCCGTCATTGTTGGAGCAGCCAGCACTCCTTACCACGACGGATTATTCTTCTTCGACATTAAGTTCCCGTCCAACTACCCGTACCAACCGCCACAGGTTCATTACCATTCCCACGGATTGAGGCTCAACCCGAATCTGTATGCAAACGGCAAGGTCTGTCTGAGCTTGCTCAATACGTGGTCCGGGAAAAAGAAAGAGATGTGGGATCCAGATCAGTCGACGATCCTCCAAGTACTGGTGTCTATACAAGGACTGGTTCTGAACGAAAAGCCCTTCTATAATGAACCCTGTCGTCTCCGTATCTTTCAGGAGGAGAACTCCCGTCGTTACAATGAGGACGCGTTTATCAAAACGTGCAAGACGACGTTGTATTTGCTCCAAAAACCGCCCAAGAATTTTGAGCTTTTCACGGCCGACCATTTTCGACAGAGAGCAAACCGGATACTGAGAGCTTGTAACGCTTACACTAACAGTCGTGTGGGAGTCGGGTACTACAGAGATGACAATGAAAATGTAACTAAGGATGACACTAAAGTTAAGGACTCTGCAATTTCAGTTCACCCTGTTTCGCCGACATTTATTGTTTCGATGGAACAGTTGTACCCGAAACTCGTTGTGGTTTTTAGATGGAATAAGGCCCCAAATTTGGTCGAGCACTTGAATTTGGAGAACGTTACGACGCCGCGGGGGCTGCAGGCATGCTTTGTCATCCTTATTGTCTTCTGCTTTGTTGTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

317

Amino Acids

36.82

Weight (kDa)

9.02

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	43 - 175	1.2e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	3 cut(s)	135, 554, 898
AciI	CCGC	4 cut(s)	302, 599, 896, 898
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	3 cut(s)	413, 426, 430
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	4 cut(s)	144, 607, 856, 874
AcyI	GRCGYC	2 cut(s)	36, 893
AfaI	GTAC	6 cut(s)	119, 188, 296, 447, 704, 815
AfiI	CCNNNNNNNGG	3 cut(s)	211, 448, 859
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	1 cut(s)	874
AluBI	AGCT	4 cut(s)	21, 378, 616, 665
AluI	AGCT	4 cut(s)	21, 378, 616, 665
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	46, 512
AlwI	GGATC	3 cut(s)	413, 426, 430
AoxI	GGCC	3 cut(s)	213, 624, 849
ApeKI	GCWGC	2 cut(s)	230, 904
ApoI	RAATTY	4 cut(s)	144, 607, 856, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	4 cut(s)	46, 213, 393, 850
AsuC2I	CCSGG	2 cut(s)	164, 397
AsuHPI	GGTGA	2 cut(s)	88, 764
AvaII	GGWCC	2 cut(s)	46, 393
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BamHI	GGATCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	925
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	242, 891
BccI	CCATC	2 cut(s)	796, 834
BceAI	ACGGC	3 cut(s)	200, 376, 639
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	2 cut(s)	164, 397
BcoDI	GTCTC	2 cut(s)	46, 512
BfmI	CTRYAG	3 cut(s)	64, 706, 905
BfuI	GTATCC	1 cut(s)	648
BglI	GCCNNNNNGGC	1 cut(s)	901
BisI	GCNGC	3 cut(s)	231, 896, 905
BlsI	GCNGC	3 cut(s)	232, 897, 906
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	2 cut(s)	164, 397
Bme18I	GGWCC	2 cut(s)	46, 393
BmgT120I	GGNCC	4 cut(s)	46, 213, 393, 850
BmiI	GGNNCC	3 cut(s)	6, 420, 852
BmrFI	CCNGG	2 cut(s)	164, 397
BpiI	GAAGAC	1 cut(s)	925
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpuMI	CCSGG	2 cut(s)	164, 397
BsaAI	YACGTR	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	2 cut(s)	36, 893
BsaJI	CCNNGG	2 cut(s)	325, 896
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 448, 859
Bse1I	ACTGG	2 cut(s)	453, 471
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	325, 896
BseGI	GGATG	2 cut(s)	742, 921
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	211, 448, 859
BseMII	CTCAG	3 cut(s)	200, 365, 650
BseNI	ACTGG	2 cut(s)	453, 471
BseRI	GAGGAG	1 cut(s)	539
BseX3I	CGGCCG	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	242, 891
Bsh1236I	CGCG	3 cut(s)	135, 554, 898
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	3 cut(s)	215, 626, 851
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	3 cut(s)	164, 396, 652
BslI	CCNNNNNNNGG	3 cut(s)	211, 448, 859
BsmAI	GTCTC	2 cut(s)	46, 512
BsmBI	CGTCTC	2 cut(s)	46, 512
BsnI	GGCC	3 cut(s)	215, 626, 851
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp1407I	TGTACA	2 cut(s)	117, 186
Bsp143I	GATC	4 cut(s)	126, 418, 424, 435
BspACI	CCGC	4 cut(s)	302, 599, 896, 898
BspANI	GGCC	3 cut(s)	215, 626, 851
BspCNI	CTCAG	3 cut(s)	201, 366, 651
BspFNI	CGCG	3 cut(s)	135, 554, 898
BspLI	GGNNCC	3 cut(s)	6, 420, 852
BspMAI	CTGCAG	1 cut(s)	909
BspPI	GGATC	3 cut(s)	413, 426, 430
BsrGI	TGTACA	2 cut(s)	117, 186
BsrI	ACTGG	2 cut(s)	453, 471
BssECI	CCNNGG	2 cut(s)	325, 896
BssMI	GATC	4 cut(s)	126, 418, 424, 435
BssNI	GRCGYC	2 cut(s)	36, 893
Bst4CI	ACNGT	5 cut(s)	92, 104, 115, 686, 810
BstACI	GRCGYC	2 cut(s)	36, 893
BstAUI	TGTACA	2 cut(s)	117, 186
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	235, 380, 909, 913
BstDEI	CTNAG	6 cut(s)	10, 149, 209, 374, 659, 732
BstDSI	CCRYGG	2 cut(s)	325, 896
BstF5I	GGATG	2 cut(s)	742, 921
BstFNI	CGCG	3 cut(s)	135, 554, 898
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	4 cut(s)	129, 421, 427, 438
BstMAI	GTCTC	2 cut(s)	46, 512
BstMBI	GATC	4 cut(s)	126, 418, 424, 435
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	3 cut(s)	671, 901, 904
BstNSI	RCATGY	1 cut(s)	915
BstSCI	CCNGG	2 cut(s)	162, 395
BstSFI	CTRYAG	3 cut(s)	64, 706, 905
BstUI	CGCG	3 cut(s)	135, 554, 898
BstV1I	GCAGC	2 cut(s)	242, 891
BstV2I	GAAGAC	1 cut(s)	925
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BstZI	CGGCCG	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	215, 626, 851
BtgI	CCRYGG	2 cut(s)	325, 896
BtsCI	GGATG	2 cut(s)	742, 921
BtsIMutI	CAGTG	2 cut(s)	72, 120
Cac8I	GCNNGC	4 cut(s)	235, 380, 909, 913
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	4 cut(s)	46, 213, 393, 850
Cfr42I	CCGCGG	1 cut(s)	899
CseI	GACGC	2 cut(s)	560, 901
Csp6I	GTAC	6 cut(s)	118, 187, 295, 446, 703, 814
CviAII	CATG	2 cut(s)	130, 912
CviQI	GTAC	6 cut(s)	118, 187, 295, 446, 703, 814
DdeI	CTNAG	6 cut(s)	10, 149, 209, 374, 659, 732
DpnI	GATC	4 cut(s)	128, 420, 426, 437
DpnII	GATC	4 cut(s)	126, 418, 424, 435
EaeI	YGGCCR	1 cut(s)	624
EagI	CGGCCG	1 cut(s)	624
EclXI	CGGCCG	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	46, 393
Eco52I	CGGCCG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	850
Esp3I	CGTCTC	2 cut(s)	46, 512
FaeI	CATG	2 cut(s)	133, 915
FaiI	YATR	6 cut(s)	131, 177, 354, 458, 492, 913
FatI	CATG	2 cut(s)	129, 911
FauI	CCCGC	1 cut(s)	891
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	3 cut(s)	231, 896, 905
FokI	GGATG	2 cut(s)	749, 908
Fsp4HI	GCNGC	3 cut(s)	231, 896, 905
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	3 cut(s)	231, 896, 905
HaeIII	GGCC	3 cut(s)	215, 626, 851
HapII	CCGG	3 cut(s)	164, 396, 652
HgaI	GACGC	2 cut(s)	560, 901
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	2 cut(s)	36, 893
Hin1II	CATG	2 cut(s)	133, 915
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	6 cut(s)	30, 167, 198, 346, 696, 755
HpaII	CCGG	3 cut(s)	164, 396, 652
HphI	GGTGA	2 cut(s)	88, 764
Hpy166II	GTNNAC	4 cut(s)	118, 187, 432, 772
Hpy188I	TCNGA	4 cut(s)	46, 55, 375, 474
Hpy188III	TCNNGA	2 cut(s)	422, 521
Hpy8I	GTNNAC	4 cut(s)	118, 187, 432, 772
Hpy99I	CGWCG	7 cut(s)	38, 41, 254, 436, 540, 580, 895
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	5 cut(s)	92, 104, 115, 686, 810
HpyCH4IV	ACGT	5 cut(s)	36, 389, 566, 578, 885
HpyCH4V	TGCA	5 cut(s)	356, 570, 761, 907, 949
HpyF10VI	GCNNNNNNNGC	3 cut(s)	671, 901, 904
HpyF3I	CTNAG	6 cut(s)	10, 149, 209, 374, 659, 732
HpySE526I	ACGT	5 cut(s)	36, 389, 566, 578, 885
Hsp92I	GRCGYC	2 cut(s)	36, 893
Hsp92II	CATG	2 cut(s)	133, 915
HspAI	GCGC	1 cut(s)	133
KspI	CCGCGG	1 cut(s)	899
Kzo9I	GATC	4 cut(s)	126, 418, 424, 435
LmnI	GCTCC	3 cut(s)	10, 227, 594
Lsp1109I	GCAGC	2 cut(s)	242, 891
MaeII	ACGT	5 cut(s)	36, 389, 566, 578, 885
MaeIII	GTNAC	4 cut(s)	539, 668, 727, 886
MalI	GATC	4 cut(s)	128, 420, 426, 437
MboI	GATC	4 cut(s)	126, 418, 424, 435
MboII	GAAGA	4 cut(s)	136, 253, 256, 925
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	5 cut(s)	144, 607, 762, 856, 874
MluI	ACGCGT	1 cut(s)	552
MlyI	GAGTC	3 cut(s)	161, 705, 749
MmeI	TCCRAC	2 cut(s)	205, 309
MnlI	CCTC	6 cut(s)	170, 204, 327, 449, 517, 541
MseI	TTAA	2 cut(s)	273, 750
MspA1I	CMGCKG	1 cut(s)	898
MspI	CCGG	3 cut(s)	164, 396, 652
MspR9I	CCNGG	2 cut(s)	164, 397
MvnI	CGCG	3 cut(s)	135, 554, 898
MwoI	GCNNNNNNNGC	3 cut(s)	671, 901, 904
NciI	CCSGG	2 cut(s)	164, 397
NdeII	GATC	4 cut(s)	126, 418, 424, 435
NlaIII	CATG	2 cut(s)	133, 915
NlaIV	GGNNCC	3 cut(s)	6, 420, 852
NspI	RCATGY	1 cut(s)	915
PaeI	GCATGC	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PfeI	GAWTC	3 cut(s)	30, 198, 346
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	448
PfoI	TCCNGGA	2 cut(s)	162, 395
PkrI	GCNGC	3 cut(s)	232, 897, 906
PleI	GAGTC	3 cut(s)	161, 704, 749
PpsI	GAGTC	3 cut(s)	161, 704, 749
Ppu21I	YACGTR	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	885
PspN4I	GGNNCC	3 cut(s)	6, 420, 852
PspPI	GGNCC	4 cut(s)	46, 213, 393, 850
PstI	CTGCAG	1 cut(s)	909
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	6 cut(s)	119, 188, 296, 447, 704, 815
RsaNI	GTAC	6 cut(s)	118, 187, 295, 446, 703, 814
SacII	CCGCGG	1 cut(s)	899
SalI	GTCGAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	273, 750
SatI	GCNGC	3 cut(s)	231, 896, 905
Sau3AI	GATC	4 cut(s)	126, 418, 424, 435
Sau96I	GGNCC	4 cut(s)	46, 213, 393, 850
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	3 cut(s)	161, 705, 749
ScrFI	CCNGG	2 cut(s)	164, 397
SduI	GDGCHC	1 cut(s)	870
SfcI	CTRYAG	3 cut(s)	64, 706, 905
Sfr303I	CCGCGG	1 cut(s)	899
SgrBI	CCGCGG	1 cut(s)	899
SinI	GGWCC	2 cut(s)	46, 393
SphI	GCATGC	1 cut(s)	915
Sse9I	AATT	5 cut(s)	144, 607, 762, 856, 874
SsiI	CCGC	4 cut(s)	302, 599, 896, 898
StyD4I	CCNGG	2 cut(s)	162, 395
TaaI	ACNGT	5 cut(s)	92, 104, 115, 686, 810
TaiI	ACGT	5 cut(s)	39, 392, 569, 581, 888
TaqI	TCGA	9 cut(s)	33, 170, 196, 201, 267, 431, 637, 800, 864
TasI	AATT	5 cut(s)	144, 607, 762, 856, 874
TatI	WGTACW	3 cut(s)	117, 186, 445
TauI	GCSGC	1 cut(s)	898
TfiI	GAWTC	3 cut(s)	30, 198, 346
Tru1I	TTAA	2 cut(s)	273, 750
Tru9I	TTAA	2 cut(s)	273, 750
TscAI	CASTG	2 cut(s)	79, 120
TseI	GCWGC	2 cut(s)	230, 904
TspDTI	ATGAA	3 cut(s)	302, 510, 735
TspGWI	ACGGA	4 cut(s)	99, 267, 342, 500
TspRI	CASTG	2 cut(s)	79, 120
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	2 cut(s)	46, 393
XapI	RAATTY	4 cut(s)	144, 607, 856, 874
XceI	RCATGY	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	431
ZraI	GACGTC	1 cut(s)	37
ZrmI	AGTACT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.