Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Forward (+)

26868179 .. 26869273

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24921.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTGCTCAAAGATATTGGATACTCCAACACAATGGGGATGTCATATTCCTAAAGAAATAAAATACAGGAAGAAGTTCTCTGGCACCAAGCATGGTAAAAATTTCGCTTCTAAAAAGAAGTATAAGTTCAGGAAGAAGCCTGAATATAAGAAAGAACAATCTTCTCAAACTTCTCCTAGAAAGAGATTCTTCAAAAAGAAAAAGAAAATCAATTTTTCTTCTAGAGAAGTAAAGAAATGCAGATGTTGGCTTTGCAAAGCAGAGGGACATTATGCAAATGAGTGTCCTAAAAAGGACAAGAGATCTTCTAAAGCCTTAATTGCTGAGTACGATGAAGCAATAGAGTATGCTCATCTAAAAGGCTTTGAAATCGCATATTCTGATGAAGAGAATGAATCAATATATTCTCTTGAGTTCCCATCAGAAAGCGAGATGGAAAGAGAAACTTATCATCGAGAATGCTTTATTGCAGAACTAAGAAGAAAAACCAAGGATAATGAAGCACATGTCCTGGTAGAAGAGGAATACAATAACAAGGAAATCAAGGAGTCTCTTGATTCACTTAAGTCCATGAGTGCCAATCCAATACTTGGTCTGACAAATGATAATCCTCTTGATTCCATAACTGCAGTGAGAAAGGTCAACCCTTTCACAGAAATACTTGATGCTCCAAGAGAGCAAGCGCGAATACTGGTTCAGGGTACAGTCTTGCTAAAAGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

28.23

Weight (kDa)

9.22

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccII	CGCG	1 cut(s)	685
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	2 cut(s)	329, 703
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	193, 368
AjnI	CCWGG	1 cut(s)	510
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	555
ApoI	RAATTY	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	2 cut(s)	427, 427
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	2 cut(s)	177, 222
BfmI	CTRYAG	1 cut(s)	627
BfrI	CTTAAG	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	655
BpuEI	CTTGAG	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	685
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	2 cut(s)	381, 513
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	2 cut(s)	324, 476
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	685
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	627
BstUI	CGCG	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	1 cut(s)	681
CfoI	GCGC	1 cut(s)	685
Csp6I	GTAC	2 cut(s)	328, 702
CviAII	CATG	3 cut(s)	92, 506, 571
CviJI	RGCY	4 cut(s)	139, 250, 314, 363
CviKI_1	RGCY	4 cut(s)	139, 250, 314, 363
CviQI	GTAC	2 cut(s)	328, 702
DdeI	CTNAG	2 cut(s)	324, 476
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	381, 513
EarI	CTCTTC	2 cut(s)	381, 513
Eco130I	CCWWGG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	95, 509, 574
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 430, 462
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	3 cut(s)	91, 505, 570
FokI	GGATG	1 cut(s)	51
FspBI	CTAG	2 cut(s)	177, 222
GlaI	GCGC	1 cut(s)	684
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	3 cut(s)	95, 509, 574
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	5 cut(s)	186, 395, 548, 557, 617
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	3 cut(s)	382, 424, 597
Hpy188III	TCNNGA	6 cut(s)	130, 222, 410, 455, 554, 614
Hpy8I	GTNNAC	1 cut(s)	643
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	240, 255, 275, 470, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	324, 476
Hsp92II	CATG	3 cut(s)	95, 509, 574
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	673
LpnPI	CCDG	8 cut(s)	52, 66, 115, 153, 497, 524, 677, 683
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	177, 222
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	9 cut(s)	82, 145, 153, 181, 210, 297, 398, 492, 530
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	100, 211, 318
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	256, 514, 621
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	317, 564
MspCI	CTTAAG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	685
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	95, 509, 574
NlaIV	GGNNCC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	509
PciI	ACATGT	1 cut(s)	505
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	186, 395, 557, 617
PflMI	CCANNNNNTGG	1 cut(s)	590
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PscI	ACATGT	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	2 cut(s)	329, 703
RsaNI	GTAC	2 cut(s)	328, 702
SaqAI	TTAA	2 cut(s)	317, 564
Sau3AI	GATC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	1 cut(s)	642
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	410, 563
SmoI	CTYRAG	2 cut(s)	410, 563
Sse9I	AATT	3 cut(s)	100, 211, 318
SspMI	CTAG	2 cut(s)	177, 222
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	454
TasI	AATT	3 cut(s)	100, 211, 318
TfiI	GAWTC	4 cut(s)	186, 395, 557, 617
Tru1I	TTAA	2 cut(s)	317, 564
Tru9I	TTAA	2 cut(s)	317, 564
TscAI	CASTG	1 cut(s)	636
TspDTI	ATGAA	4 cut(s)	348, 399, 408, 513
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	1 cut(s)	563
XapI	RAATTY	1 cut(s)	100
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	2 cut(s)	177, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.