Rmu_sc0035757.1_g000001

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035757.1
OG0001755
Physical Location & Seq
Reverse (-)
2 .. 479
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035757.1_g000001.1.cds

Sequence Viewer

Length: 478 bp
atgtcttcttatcaggtgaaccctggttcattcgtttgtgactactgcttttgtcatgaaaagaatggtctccctatgttctgtgaagagtctaagaagacttatcacaaagaatgcttcatagctgaagctagaagaaaaaccaagaatggacttgtcaaccagttggtcgaacaagaatatgaagagtattttgctgagaaaaaggcaaaagaagttgaaactctgttccaggaaaccatggaatcatcttccttagtaaaaaaggaagaaatcttcggtgaagatattgaactggttgaaaacccagaaactgttcatctcttagaacgacaagagactactggcacgtgggatctacttggccaaccttcgggcaagtttgattacaaagtcatatatgatcctcctgcctggtacaataagccagacaacaaagaggtgattcctacagactgggatgatacaaaatcagcaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0002227 GO:0002251 GO:0002376 GO:0002385 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006952 GO:0006955 GO:0006959 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0019730 GO:0019731 GO:0019953 GO:0022414 GO:0022625 GO:0022626 GO:0032501 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042742 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044421 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045047 GO:0045087 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048232 GO:0048519 GO:0048609 GO:0050789 GO:0050830 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0060255 GO:0061844 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 ko03010 map00970 map01100 map03010
Pfam Domains
Protein Families
Ribosomal_L39

Protein Analysis

159

Amino Acids

18.56

Weight (kDa)

4.69

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 363, 398
AcoI YGGCCR 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 147
AcvI CACGTG 1 cut(s) 351
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 3 cut(s) 221, 293, 302
AjnI CCWGG 3 cut(s) 22, 231, 413
AluBI AGCT 2 cut(s) 125, 131
AluI AGCT 2 cut(s) 125, 131
Alw26I GTCTC 2 cut(s) 74, 332
AlwI GGATC 2 cut(s) 363, 398
AlwNI CAGNNNCTG 1 cut(s) 314
AoxI GGCC 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 315
AsuHPI GGTGA 3 cut(s) 28, 293, 454
BalI TGGCCA 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 104
BciT130I CCWGG 3 cut(s) 24, 233, 415
BcoDI GTCTC 2 cut(s) 74, 332
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 450
Bme1390I CCNGG 3 cut(s) 24, 233, 415
BmrFI CCNGG 3 cut(s) 24, 233, 415
BmrI ACTGGG 1 cut(s) 466
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 22, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 4 cut(s) 163, 300, 349, 461
BseBI CCWGG 3 cut(s) 24, 233, 415
BseDI CCNNGG 2 cut(s) 22, 240
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 4 cut(s) 163, 300, 349, 461
BshFI GGCC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 74, 332
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 1 cut(s) 366
Bso31I GGTCTC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 355, 403
Bsp19I CCATGG 1 cut(s) 240
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 55
BspPI GGATC 2 cut(s) 363, 398
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 4 cut(s) 163, 300, 349, 461
BssECI CCNNGG 2 cut(s) 22, 240
BssMI GATC 2 cut(s) 355, 403
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 3 cut(s) 24, 233, 415
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 2 cut(s) 81, 180
BstBAI YACGTR 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 93, 198, 256, 325
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 2 cut(s) 358, 406
BstMAI GTCTC 2 cut(s) 74, 332
BstMBI GATC 2 cut(s) 355, 403
BstNI CCWGG 3 cut(s) 24, 233, 415
BstSCI CCNGG 3 cut(s) 22, 231, 413
BstSFI CTRYAG 1 cut(s) 450
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 314
CciI TCATGA 1 cut(s) 55
Csp6I GTAC 1 cut(s) 418
CviAII CATG 2 cut(s) 56, 241
CviJI RGCY 4 cut(s) 125, 131, 366, 427
CviKI_1 RGCY 4 cut(s) 125, 131, 366, 427
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 4 cut(s) 93, 198, 256, 325
DpnI GATC 2 cut(s) 357, 405
DpnII GATC 2 cut(s) 355, 403
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 81, 180
EarI CTCTTC 2 cut(s) 81, 180
Eco130I CCWWGG 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 147
Eco72I CACGTG 1 cut(s) 351
EcoRII CCWGG 3 cut(s) 22, 231, 413
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 59, 244
FaiI YATR 8 cut(s) 57, 77, 122, 183, 242, 398, 400, 402
FatI CATG 2 cut(s) 55, 240
FokI GGATG 1 cut(s) 473
FspBI CTAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 366
Hin1II CATG 2 cut(s) 59, 244
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 89, 245, 445
HphI GGTGA 3 cut(s) 28, 293, 454
Hpy166II GTNNAC 2 cut(s) 19, 160
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 2 cut(s) 19, 160
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 350
HpyF3I CTNAG 4 cut(s) 93, 198, 256, 325
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 2 cut(s) 59, 244
Kzo9I GATC 2 cut(s) 355, 403
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 357, 405
MboI GATC 2 cut(s) 355, 403
MboII GAAGA 8 cut(s) 98, 109, 147, 197, 243, 268, 281, 296
MflI RGATCY 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 366
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 2 cut(s) 417, 433
Mox20I TGGCCA 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 315
MscI TGGCCA 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 366
MspR9I CCNGG 3 cut(s) 24, 233, 415
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 3 cut(s) 24, 233, 415
NcoI CCATGG 1 cut(s) 240
NdeII GATC 2 cut(s) 355, 403
NlaIII CATG 2 cut(s) 59, 244
NmuCI GTSAC 1 cut(s) 38
PagI TCATGA 1 cut(s) 55
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 245, 445
PfoI TCCNGGA 1 cut(s) 231
PleI GAGTC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 351
PmlI CACGTG 1 cut(s) 351
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 22, 231, 413
PspCI CACGTG 1 cut(s) 351
PspGI CCWGG 3 cut(s) 22, 231, 413
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
Sau3AI GATC 2 cut(s) 355, 403
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 24, 233, 415
SetI ASST 6 cut(s) 18, 127, 133, 353, 373, 444
SfcI CTRYAG 1 cut(s) 450
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 22, 231, 413
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 1 cut(s) 353
TaqI TCGA 1 cut(s) 171
TfiI GAWTC 2 cut(s) 245, 445
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 5 cut(s) 18, 72, 109, 198, 308
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.