Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004510.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

64523 .. 65533

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004510.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgaaaggctacgaaatagcctattctgatgatgaagacgacgacatgtcagtttattctgcctggtctgaagaagaagaaacttcatcagaggagtctgagatagattctgaagtagagtacttcgaatccagacaaatgaatgttttgaaaatcaaaaactgggaagaaagcaagacagaatctttcatgtcttcctatcaggtgaaccctggtacattcgtttgtgactactgcctttgtcacgaaaagaatggtctccctaagttttgtgaagagtcaaaaaagacttatcacaaagaatgcttcatagctgaagctagaagaaaaaccaagaatggccttgtcagccaattggttgaacaagaatatgaagaatatttctctgaacaaaaagagaaagaagaagaaaaagaggtagaaactctgttccaaaaaattatggaaccttctcttccatcttcctcagaaagaaagaaggaaatcatcggtaaagaaaacatcgatgaagatattgaactggtcgaaataccagaaaatgtagaactggtgaaaccaccagaaactattcatctcttagaacgacaagaggttactgacacatgggatctacttggccaaccatctggcaagtttgattataaagtcagatatgaccctccgtcatggttcaatgatccagagatcaaagagataagtcctacagactggaatgatacaaaaccctttagttttgagaaatcgtccatccagaaaaatgttccagaagaatgtaaaccattcattccaaaggaacaagctcaggaaaatgagcttcatcaatcgaaagccgtctctactagtagatacagcaactacatagagattggactgaaattccctgatcacagaaaatatcatctacatgcctttgtagataatggatcgggatttaccgttgcaaagagatttgcaattcgagatgaactctggaaagaagaaaaaaaaaactgctactggtgttacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

39.7

Weight (kDa)

4.7

Isoelectric Point (pI)

63.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AclWI	GGATC	3 cut(s)	615, 671, 931
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	875
AcuI	CTGAAG	3 cut(s)	90, 132, 336
AfaI	GTAC	2 cut(s)	122, 217
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	151, 362, 518, 673
AhdI	GACNNNNNGTC	2 cut(s)	46, 661
AhlI	ACTAGT	1 cut(s)	839
AjnI	CCWGG	2 cut(s)	62, 211
AluBI	AGCT	4 cut(s)	314, 320, 800, 814
AluI	AGCT	4 cut(s)	314, 320, 800, 814
Alw26I	GTCTC	2 cut(s)	263, 838
AlwI	GGATC	3 cut(s)	615, 671, 931
AoxI	GGCC	2 cut(s)	340, 616
ApoI	RAATTY	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	217, 562
AsuII	TTCGAA	1 cut(s)	126
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	1 cut(s)	618
BbsI	GAAGAC	2 cut(s)	42, 186
BccI	CCATC	3 cut(s)	466, 631, 755
BceAI	ACGGC	1 cut(s)	815
BciT130I	CCWGG	2 cut(s)	64, 213
BclI	TGATCA	1 cut(s)	883
BcoDI	GTCTC	2 cut(s)	263, 838
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	2 cut(s)	321, 840
BfmI	CTRYAG	1 cut(s)	702
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	64, 213
BmeRI	GACNNNNNGTC	2 cut(s)	46, 661
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	64, 213
BmrI	ACTGGG	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	42, 186
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
Bpu10I	CCTNAGC	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	211
Bse1I	ACTGG	5 cut(s)	167, 525, 552, 713, 1001
BseBI	CCWGG	2 cut(s)	64, 213
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	747
BseMII	CTCAG	3 cut(s)	90, 480, 815
BseNI	ACTGG	5 cut(s)	167, 525, 552, 713, 1001
BseRI	GAGGAG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	342, 618
BshVI	ATCGAT	1 cut(s)	504
BsmAI	GTCTC	2 cut(s)	263, 838
BsmBI	CGTCTC	1 cut(s)	838
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	342, 618
Bso31I	GGTCTC	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	607, 676, 684, 883, 923
BspANI	GGCC	2 cut(s)	342, 618
BspCNI	CTCAG	3 cut(s)	91, 479, 814
BspDI	ATCGAT	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	3 cut(s)	615, 671, 931
BspT104I	TTCGAA	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	5 cut(s)	167, 525, 552, 713, 1001
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	5 cut(s)	607, 676, 684, 883, 923
Bst2UI	CCWGG	2 cut(s)	64, 213
Bst4CI	ACNGT	1 cut(s)	937
Bst6I	CTCTTC	2 cut(s)	270, 459
BstBI	TTCGAA	1 cut(s)	126
BstDEI	CTNAG	5 cut(s)	99, 264, 466, 577, 801
BstF5I	GGATG	1 cut(s)	747
BstKTI	GATC	5 cut(s)	610, 679, 687, 886, 926
BstMAI	GTCTC	2 cut(s)	263, 838
BstMBI	GATC	5 cut(s)	607, 676, 684, 883, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	2 cut(s)	64, 213
BstNSI	RCATGY	2 cut(s)	49, 908
BstSCI	CCNGG	2 cut(s)	62, 211
BstSFI	CTRYAG	1 cut(s)	702
BstV2I	GAAGAC	2 cut(s)	42, 186
BstX2I	RGATCY	1 cut(s)	607
BstXI	CCANNNNNNTGG	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	342, 618
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	747
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	121, 216
CviAII	CATG	5 cut(s)	46, 190, 603, 666, 905
CviQI	GTAC	2 cut(s)	121, 216
DdeI	CTNAG	5 cut(s)	99, 264, 466, 577, 801
DpnI	GATC	5 cut(s)	609, 678, 686, 885, 925
DpnII	GATC	5 cut(s)	607, 676, 684, 883, 923
DriI	GACNNNNNGTC	2 cut(s)	46, 661
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	270, 459
Eam1105I	GACNNNNNGTC	2 cut(s)	46, 661
EarI	CTCTTC	2 cut(s)	270, 459
Eco31I	GGTCTC	1 cut(s)	263
Eco57I	CTGAAG	3 cut(s)	90, 132, 336
EcoRII	CCWGG	2 cut(s)	62, 211
Esp3I	CGTCTC	1 cut(s)	838
FaeI	CATG	5 cut(s)	49, 193, 606, 669, 908
FatI	CATG	5 cut(s)	45, 189, 602, 665, 904
FbaI	TGATCA	1 cut(s)	883
FokI	GGATG	1 cut(s)	734
FspBI	CTAG	2 cut(s)	321, 840
HaeIII	GGCC	2 cut(s)	342, 618
Hin1II	CATG	5 cut(s)	49, 193, 606, 669, 908
HinfI	GANTC	5 cut(s)	95, 107, 128, 182, 278
HphI	GGTGA	2 cut(s)	217, 562
Hpy166II	GTNNAC	2 cut(s)	208, 776
Hpy188I	TCNGA	8 cut(s)	28, 70, 91, 100, 112, 388, 469, 650
Hpy188III	TCNNGA	9 cut(s)	132, 245, 680, 751, 764, 803, 927, 959, 970
Hpy8I	GTNNAC	2 cut(s)	208, 776
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	459, 472
HpyCH4III	ACNGT	1 cut(s)	937
HpyCH4V	TGCA	2 cut(s)	941, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	5 cut(s)	99, 264, 466, 577, 801
Hsp92II	CATG	5 cut(s)	49, 193, 606, 669, 908
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	5 cut(s)	607, 676, 684, 883, 923
MaeI	CTAG	2 cut(s)	321, 840
MaeIII	GTNAC	4 cut(s)	227, 242, 592, 1001
MalI	GATC	5 cut(s)	609, 678, 686, 885, 925
MboI	GATC	5 cut(s)	607, 676, 684, 883, 923
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	607
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	4 cut(s)	353, 438, 875, 954
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	2 cut(s)	104, 287
MnlI	CCTC	5 cut(s)	85, 409, 475, 583, 669
Mox20I	TGGCCA	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	903
Msp20I	TGGCCA	1 cut(s)	618
MspR9I	CCNGG	2 cut(s)	64, 213
MunI	CAATTG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	2 cut(s)	64, 213
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	5 cut(s)	607, 676, 684, 883, 923
NlaIII	CATG	5 cut(s)	49, 193, 606, 669, 908
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	227, 242
NspI	RCATGY	2 cut(s)	49, 908
NspV	TTCGAA	1 cut(s)	126
PciI	ACATGT	1 cut(s)	45
PctI	GAATGC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	107, 128, 182
PleI	GAGTC	2 cut(s)	103, 286
PpsI	GAGTC	2 cut(s)	103, 286
PscI	ACATGT	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	62, 211
PspGI	CCWGG	2 cut(s)	62, 211
PspN4I	GGNNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	2 cut(s)	122, 217
RsaNI	GTAC	2 cut(s)	121, 216
RseI	CAYNNNNRTG	1 cut(s)	903
Sau3AI	GATC	5 cut(s)	607, 676, 684, 883, 923
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	2 cut(s)	104, 287
ScrFI	CCNGG	2 cut(s)	64, 213
SetI	ASST	8 cut(s)	207, 316, 322, 420, 451, 594, 802, 816
SfcI	CTRYAG	1 cut(s)	702
SfuI	TTCGAA	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	903
SpeI	ACTAGT	1 cut(s)	839
Sse9I	AATT	4 cut(s)	353, 438, 875, 954
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	2 cut(s)	321, 840
StyD4I	CCNGG	2 cut(s)	62, 211
TaaI	ACNGT	1 cut(s)	937
TaqI	TCGA	5 cut(s)	126, 504, 525, 824, 958
TasI	AATT	4 cut(s)	353, 438, 875, 954
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	107, 128, 182
TseFI	GTSAC	2 cut(s)	227, 242
Tsp45I	GTSAC	2 cut(s)	227, 242
TspGWI	ACGGA	1 cut(s)	651
XapI	RAATTY	1 cut(s)	875
XceI	RCATGY	2 cut(s)	49, 908
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	321, 840
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.