Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000052.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

36659 .. 37585

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000052.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgaagatcctaaaaagaaattcttcaagaaaaaaaagaatactcatcagcataaacaaccaagcaagaaagcttgcagatgttggttatgtaaagctgaagggcactatgctaatgaatgcccggaaaagggtaaaagatctactaagactctcttcgaagaatatgttcgaagaatatgagcatatagtagaatcagcaaacatgaaaggatatgaaatagtctattctgatgatgaagaagatgacaggtcagtatattctacctggttagaagaagaagaagaatcatctgactctgagaaagattctgaagtagagtactttgaatccagacagatgaatgttctgaaagtcaaaaattgggaaaaaagcaagacagatgcaattgtgtctgcttatcaggtgaaccctggtacattcatttgtgactactgcctatgtcacgaaaaggatggtccccctatgttttgtgaagagtcaaaaaagacctatcacaaagaatgcttcatagccgaagcaagaagaaaaaccaagaatggccttgtcagccaattggtagaacaagaatatgaagaatatttatctgaacaaaaagagaaaaaggtagaacctttgttccaagaaatattaaaatcatcttcctcaaaaataaaggaagaaatcatcggtgaagaaaaagccgatgaaaatattgaactggttgaaccaccagaaattgttctagaagaatgtaaaccattcatcccaaaggaacaagctcaagaaaataagcttcaacaattgaaagtcgtctctactagtagatacaacaactacatagagattggactcaaattctctgatcataaaaaatatcatctacatgcctttgtagataacggatcaagatttactgttgcaaagagatttgcaattccagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

36.08

Weight (kDa)

5.65

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	892
AcsI	RAATTY	2 cut(s)	19, 836
AcuI	CTGAAG	2 cut(s)	119, 333
AfaI	GTAC	2 cut(s)	323, 418
AfiI	CCNNNNNNNGG	2 cut(s)	129, 130
AgsI	TTSAA	6 cut(s)	27, 329, 698, 707, 779, 787
AhlI	ACTAGT	1 cut(s)	800
AjnI	CCWGG	2 cut(s)	266, 412
AloI	GAACNNNNNNTCC	2 cut(s)	603, 635
AluBI	AGCT	4 cut(s)	73, 97, 761, 775
AluI	AGCT	4 cut(s)	73, 97, 761, 775
Alw26I	GTCTC	1 cut(s)	799
AlwI	GGATC	1 cut(s)	892
AoxI	GGCC	1 cut(s)	541
ApoI	RAATTY	2 cut(s)	19, 836
Asp700I	GAANNNNTTC	3 cut(s)	22, 167, 720
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	418, 683
AsuII	TTCGAA	2 cut(s)	158, 171
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	107
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	2 cut(s)	268, 414
BclI	TGATCA	1 cut(s)	844
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	799
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	2 cut(s)	725, 801
BglII	AGATCT	1 cut(s)	139
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	3 cut(s)	124, 268, 414
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	3 cut(s)	124, 268, 414
BmsI	GCATC	1 cut(s)	373
Bpu14I	TTCGAA	2 cut(s)	158, 171
BpuEI	CTTGAG	1 cut(s)	747
BpuMI	CCSGG	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 130
Bse1I	ACTGG	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	268, 414
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	460, 744
BseLI	CCNNNNNNNGG	2 cut(s)	129, 130
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	705
BseSI	GKGCMC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	129, 130
BsmAI	GTCTC	1 cut(s)	799
BsmBI	CGTCTC	1 cut(s)	799
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	2 cut(s)	124, 509
BsnI	GGCC	1 cut(s)	543
Bsp119I	TTCGAA	2 cut(s)	158, 171
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	6, 139, 844, 884
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	892
BspT104I	TTCGAA	2 cut(s)	158, 171
BsrI	ACTGG	1 cut(s)	705
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	4 cut(s)	6, 139, 844, 884
Bst2UI	CCWGG	2 cut(s)	268, 414
Bst4CI	ACNGT	1 cut(s)	898
Bst6I	CTCTTC	2 cut(s)	160, 471
BstBI	TTCGAA	2 cut(s)	158, 171
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	146, 300
BstF5I	GGATG	2 cut(s)	460, 744
BstKTI	GATC	4 cut(s)	9, 142, 847, 887
BstMAI	GTCTC	1 cut(s)	799
BstMBI	GATC	4 cut(s)	6, 139, 844, 884
BstMWI	GCNNNNNNNGC	1 cut(s)	549
BstNI	CCWGG	2 cut(s)	268, 414
BstNSI	RCATGY	1 cut(s)	869
BstSCI	CCNGG	3 cut(s)	122, 266, 412
BstSLI	GKGCMC	1 cut(s)	107
BstX2I	RGATCY	2 cut(s)	6, 139
BstYI	RGATCY	2 cut(s)	6, 139
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	460, 744
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	458
CsiI	ACCWGGT	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	322, 417
CviAII	CATG	2 cut(s)	205, 866
CviJI	RGCY	8 cut(s)	73, 97, 515, 543, 552, 683, 761, 775
CviKI_1	RGCY	8 cut(s)	73, 97, 515, 543, 552, 683, 761, 775
CviQI	GTAC	2 cut(s)	322, 417
DdeI	CTNAG	2 cut(s)	146, 300
DpnI	GATC	4 cut(s)	8, 141, 846, 886
DpnII	GATC	4 cut(s)	6, 139, 844, 884
Eam1104I	CTCTTC	2 cut(s)	160, 471
EarI	CTCTTC	2 cut(s)	160, 471
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	119, 333
EcoRII	CCWGG	2 cut(s)	266, 412
Esp3I	CGTCTC	1 cut(s)	799
FaeI	CATG	2 cut(s)	208, 869
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 139, 171
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	2 cut(s)	204, 865
FbaI	TGATCA	1 cut(s)	844
FokI	GGATG	2 cut(s)	467, 731
FspBI	CTAG	2 cut(s)	725, 801
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	2 cut(s)	208, 869
HindIII	AAGCTT	2 cut(s)	71, 773
HinfI	GANTC	8 cut(s)	150, 194, 287, 296, 308, 329, 479, 831
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	418, 683
Hpy166II	GTNNAC	2 cut(s)	409, 737
Hpy188I	TCNGA	7 cut(s)	232, 295, 301, 313, 351, 589, 844
Hpy188III	TCNNGA	7 cut(s)	27, 333, 446, 725, 764, 888, 920
Hpy8I	GTNNAC	2 cut(s)	409, 737
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	898
HpyCH4V	TGCA	4 cut(s)	77, 386, 902, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	549
HpyF3I	CTNAG	2 cut(s)	146, 300
Hsp92II	CATG	2 cut(s)	208, 869
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	4 cut(s)	6, 139, 844, 884
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	266
MaeI	CTAG	2 cut(s)	725, 801
MaeIII	GTNAC	2 cut(s)	428, 443
MalI	GATC	4 cut(s)	8, 141, 846, 886
MboI	GATC	4 cut(s)	6, 139, 844, 884
MfeI	CAATTG	3 cut(s)	387, 554, 782
MflI	RGATCY	2 cut(s)	6, 139
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	8 cut(s)	19, 361, 387, 554, 717, 782, 836, 915
MlyI	GAGTC	4 cut(s)	144, 290, 488, 825
MnlI	CCTC	1 cut(s)	655
MroXI	GAANNNNTTC	3 cut(s)	22, 167, 720
MseI	TTAA	2 cut(s)	632, 925
MslI	CAYNNNNRTG	1 cut(s)	864
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	3 cut(s)	124, 268, 414
MunI	CAATTG	3 cut(s)	387, 554, 782
Mva1269I	GAATGC	2 cut(s)	124, 509
MvaI	CCWGG	2 cut(s)	268, 414
MwoI	GCNNNNNNNGC	1 cut(s)	549
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	4 cut(s)	6, 139, 844, 884
NlaIII	CATG	2 cut(s)	208, 869
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	2 cut(s)	428, 443
NspI	RCATGY	1 cut(s)	869
NspV	TTCGAA	2 cut(s)	158, 171
PctI	GAATGC	2 cut(s)	124, 509
PdmI	GAANNNNTTC	3 cut(s)	22, 167, 720
PfeI	GAWTC	4 cut(s)	194, 287, 308, 329
PleI	GAGTC	4 cut(s)	144, 290, 487, 825
PpsI	GAGTC	4 cut(s)	144, 290, 487, 825
Psp6I	CCWGG	2 cut(s)	266, 412
PspGI	CCWGG	2 cut(s)	266, 412
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	6, 139
RsaI	GTAC	2 cut(s)	323, 418
RsaNI	GTAC	2 cut(s)	322, 417
RseI	CAYNNNNRTG	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	632, 925
Sau3AI	GATC	4 cut(s)	6, 139, 844, 884
Sau96I	GGNCC	1 cut(s)	458
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	4 cut(s)	144, 290, 488, 825
ScrFI	CCNGG	3 cut(s)	124, 268, 414
SduI	GDGCHC	1 cut(s)	107
SexAI	ACCWGGT	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	373
SfuI	TTCGAA	2 cut(s)	158, 171
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
SpeI	ACTAGT	1 cut(s)	800
Sse9I	AATT	8 cut(s)	19, 361, 387, 554, 717, 782, 836, 915
SspI	AATATT	3 cut(s)	581, 630, 694
SspMI	CTAG	2 cut(s)	725, 801
StyD4I	CCNGG	3 cut(s)	122, 266, 412
TaaI	ACNGT	1 cut(s)	898
TaqI	TCGA	2 cut(s)	158, 171
TasI	AATT	8 cut(s)	19, 361, 387, 554, 717, 782, 836, 915
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	4 cut(s)	194, 287, 308, 329
Tru1I	TTAA	2 cut(s)	632, 925
Tru9I	TTAA	2 cut(s)	632, 925
TseFI	GTSAC	2 cut(s)	428, 443
Tsp45I	GTSAC	2 cut(s)	428, 443
TspGWI	ACGGA	1 cut(s)	897
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	2 cut(s)	19, 836
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	1 cut(s)	869
XmnI	GAANNNNTTC	3 cut(s)	22, 167, 720
XspI	CTAG	2 cut(s)	725, 801
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.