Rmu_sc0002845.1_g000027

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002845.1
Physical Location & Seq
Reverse (-)
125844 .. 126392
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002845.1_g000027.1.cds

Sequence Viewer

Length: 549 bp
atgtcttcttatcaggtgaaccctggtacattcgtttgtgactactacctatgtcacgaaaagaatggtcttcctatgttctgtgaagagtcaaaaaagacttatcacaaggaatgtttcatagctgaagcaagaagaaaaaccaagaatggcattgtcagccaattagtagaacaagaatatgaagaatatttctctgagcaaaaagagaaagaagtagaaactttgttccaagaagtcatggaaccgtcttcctcaaaaataaaggaagaaatcatcagtgaagaaaaaatcgatgaaaatgaaaattttgaactggttgaaacaccagaaattgttccagaagaatgtaaatcattcattccaaaggaacaagctcaggaaaatgagcttcaacaatcgaaagtcgtctctactagcagatacagcaactacatagagattgggctaaaattccctgatcacaaaaaatatcatctacatgcctttgtagataatggatcaggatttacagttgcaaaaagatttgcaattccagaagaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

21.3

Weight (kDa)

4.87

Isoelectric Point (pI)

63.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 508
AcsI RAATTY 2 cut(s) 307, 452
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 3 cut(s) 314, 323, 395
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 3 cut(s) 125, 377, 391
AluI AGCT 3 cut(s) 125, 377, 391
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 1 cut(s) 508
ApoI RAATTY 2 cut(s) 307, 452
Asp700I GAANNNNTTC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 28
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BbsI GAAGAC 2 cut(s) 62, 243
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 2 cut(s) 417, 547
Bme1390I CCNGG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 24
BpiI GAAGAC 2 cut(s) 62, 243
Bpu10I CCTNAGC 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 189, 392
BseNI ACTGG 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 415
BsmBI CGTCTC 1 cut(s) 415
Bsp143I GATC 2 cut(s) 460, 500
BspCNI CTCAG 2 cut(s) 190, 391
BspDI ATCGAT 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 508
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 460, 500
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 249, 514
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 198, 378
BstKTI GATC 2 cut(s) 463, 503
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 2 cut(s) 460, 500
BstMWI GCNNNNNNNGC 2 cut(s) 159, 426
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 22
BstV2I GAAGAC 2 cut(s) 62, 243
Bsu15I ATCGAT 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 1 cut(s) 27
CviAII CATG 2 cut(s) 241, 482
CviJI RGCY 5 cut(s) 125, 162, 377, 391, 448
CviKI_1 RGCY 5 cut(s) 125, 162, 377, 391, 448
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 2 cut(s) 198, 378
DpnI GATC 2 cut(s) 462, 502
DpnII GATC 2 cut(s) 460, 500
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 2 cut(s) 244, 485
FaiI YATR 7 cut(s) 52, 77, 122, 183, 242, 437, 483
FatI CATG 2 cut(s) 240, 481
FbaI TGATCA 1 cut(s) 460
FspBI CTAG 2 cut(s) 417, 547
Hin1II CATG 2 cut(s) 244, 485
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 5 cut(s) 56, 341, 380, 504, 536
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 249, 514
HpyCH4V TGCA 2 cut(s) 518, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 426
HpyF3I CTNAG 2 cut(s) 198, 378
Hsp92II CATG 2 cut(s) 244, 485
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 2 cut(s) 460, 500
LpnPI CCDG 8 cut(s) 9, 36, 302, 342, 354, 365, 471, 489
MaeI CTAG 2 cut(s) 417, 547
MaeIII GTNAC 2 cut(s) 38, 53
MalI GATC 2 cut(s) 462, 502
MboI GATC 2 cut(s) 460, 500
MboII GAAGA 8 cut(s) 62, 98, 147, 197, 243, 281, 296, 356
MluCI AATT 5 cut(s) 164, 307, 333, 452, 531
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 159, 426
NdeII GATC 2 cut(s) 460, 500
NlaIII CATG 2 cut(s) 244, 485
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 38, 53
NspI RCATGY 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 336
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 246
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 480
Sau3AI GATC 2 cut(s) 460, 500
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 24
SetI ASST 5 cut(s) 18, 51, 127, 379, 393
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 5 cut(s) 164, 307, 333, 452, 531
SspI AATATT 1 cut(s) 191
SspMI CTAG 2 cut(s) 417, 547
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 249, 514
TaqI TCGA 2 cut(s) 294, 401
TasI AATT 5 cut(s) 164, 307, 333, 452, 531
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 2 cut(s) 38, 53
Tsp45I GTSAC 2 cut(s) 38, 53
TspDTI ATGAA 5 cut(s) 109, 198, 312, 318, 349
TspRI CASTG 1 cut(s) 286
XapI RAATTY 2 cut(s) 307, 452
XceI RCATGY 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 2 cut(s) 417, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.