Rmu_sc0013208.1_g000001

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013208.1
OG0001755
Physical Location & Seq
Reverse (-)
2 .. 763
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013208.1_g000001.1.cds

Sequence Viewer

Length: 762 bp
atgaaaggctacgaaatagcctattctgatgatgaagaagatgacatgtcagtctactctgcctggtctgaagaagaagaaacttcatcagaagagtctgagaatgattcggaagtagagtacttcgaatccaggcaaatgcatgttttgaaaatcaaaaactgggaagaaagcaagacagaatccttcatgtcttcttatcaggtgaaccctggttcattcgtttgtgactactacttttgtcacgaaaagaatggtctccctatgttctgtgaagagtctaagaagacttatcacaaagaatgcttcatagctgaagctagaagaaaaaccaagaatggacttgtcaaccagttggtcgaacaagaatatgaagagtattttgctgagaaaaaggcaaaagaagtagaaactctgttccaggaaaccatggaacaaccctcttccccgaaaaaggaagaaatcatcgatgaagaaaaaatcgatgcggatattgaactggttgaaataccagaaaagactgaactggtgaaaccaccagaagctgttcatctcttagaaagacaagagatcgctgcagatactggcacttgggatctacttggccaaccatccggtaagtttgattacaaagtcagatatgatcctccgtcctggtatactgatccagacagcaaaaggattattcctacagattgggatgataatgaagatgaatcacccactcaggaaaatgttccagaagaatgtaaaccattcatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0002227 GO:0002251 GO:0002376 GO:0002385 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006952 GO:0006955 GO:0006959 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0019730 GO:0019731 GO:0019953 GO:0022414 GO:0022625 GO:0022626 GO:0032501 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042742 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044421 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045047 GO:0045087 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048232 GO:0048519 GO:0048609 GO:0050789 GO:0050830 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0060255 GO:0061844 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 ko03010 map00970 map01100 map03010
Pfam Domains
Protein Families
Ribosomal_L39

Protein Analysis

254

Amino Acids

29.84

Weight (kDa)

4.32

Isoelectric Point (pI)

70.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AccI GTMKAC 2 cut(s) 54, 659
AciI CCGC 1 cut(s) 488
AclWI GGATC 3 cut(s) 603, 638, 659
AcoI YGGCCR 1 cut(s) 604
AcuI CTGAAG 2 cut(s) 90, 336
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 454
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 3 cut(s) 151, 497, 506
AjnI CCWGG 5 cut(s) 62, 131, 211, 420, 653
AluBI AGCT 3 cut(s) 314, 320, 545
AluI AGCT 3 cut(s) 314, 320, 545
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 3 cut(s) 603, 638, 659
AlwNI CAGNNNCTG 2 cut(s) 545, 584
AoxI GGCC 1 cut(s) 604
ApeKI GCWGC 1 cut(s) 575
Asp700I GAANNNNTTC 2 cut(s) 546, 735
AsuHPI GGTGA 3 cut(s) 217, 541, 711
AsuII TTCGAA 1 cut(s) 126
BalI TGGCCA 1 cut(s) 606
BbsI GAAGAC 2 cut(s) 186, 293
BbvI GCAGC 1 cut(s) 562
BccI CCATC 1 cut(s) 619
BciT130I CCWGG 5 cut(s) 64, 133, 213, 422, 655
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 2 cut(s) 576, 690
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 122
Bme1390I CCNGG 5 cut(s) 64, 133, 213, 422, 655
BmrFI CCNGG 5 cut(s) 64, 133, 213, 422, 655
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 475
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 2 cut(s) 186, 293
Bpu14I TTCGAA 1 cut(s) 126
Bsa29I ATCGAT 2 cut(s) 468, 483
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 211, 429
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse1I ACTGG 5 cut(s) 167, 352, 504, 531, 589
BseBI CCWGG 5 cut(s) 64, 133, 213, 422, 655
BseCI ATCGAT 2 cut(s) 468, 483
BseDI CCNNGG 2 cut(s) 211, 429
BseGI GGATG 2 cut(s) 611, 706
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMII CTCAG 3 cut(s) 90, 378, 740
BseNI ACTGG 5 cut(s) 167, 352, 504, 531, 589
BseXI GCAGC 1 cut(s) 562
BshFI GGCC 1 cut(s) 606
BshVI ATCGAT 2 cut(s) 468, 483
BsiSI CCGG 1 cut(s) 615
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 606
Bso31I GGTCTC 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 126
Bsp143I GATC 4 cut(s) 570, 595, 643, 664
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 1 cut(s) 488
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 3 cut(s) 91, 379, 739
BspDI ATCGAT 2 cut(s) 468, 483
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 3 cut(s) 603, 638, 659
BspT104I TTCGAA 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 5 cut(s) 167, 352, 504, 531, 589
BssECI CCNNGG 2 cut(s) 211, 429
BssMI GATC 4 cut(s) 570, 595, 643, 664
BssNAI GTATAC 1 cut(s) 660
BssT1I CCWWGG 1 cut(s) 429
Bst1107I GTATAC 1 cut(s) 660
Bst2UI CCWGG 5 cut(s) 64, 133, 213, 422, 655
Bst6I CTCTTC 4 cut(s) 87, 270, 369, 448
BstBI TTCGAA 1 cut(s) 126
BstDEI CTNAG 5 cut(s) 99, 282, 387, 556, 726
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 611, 706
BstKTI GATC 4 cut(s) 573, 598, 646, 667
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 4 cut(s) 570, 595, 643, 664
BstNI CCWGG 5 cut(s) 64, 133, 213, 422, 655
BstNSI RCATGY 2 cut(s) 49, 146
BstSCI CCNGG 5 cut(s) 62, 131, 211, 420, 653
BstSFI CTRYAG 2 cut(s) 576, 690
BstV1I GCAGC 1 cut(s) 562
BstV2I GAAGAC 2 cut(s) 186, 293
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 660
Bsu15I ATCGAT 2 cut(s) 468, 483
BsuRI GGCC 1 cut(s) 606
BsuTUI ATCGAT 2 cut(s) 468, 483
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 2 cut(s) 611, 706
CaiI CAGNNNCTG 2 cut(s) 545, 584
ClaI ATCGAT 2 cut(s) 468, 483
Csp6I GTAC 1 cut(s) 121
CviAII CATG 4 cut(s) 46, 143, 190, 430
CviJI RGCY 6 cut(s) 9, 20, 314, 320, 545, 606
CviKI_1 RGCY 6 cut(s) 9, 20, 314, 320, 545, 606
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 5 cut(s) 99, 282, 387, 556, 726
DpnI GATC 4 cut(s) 572, 597, 645, 666
DpnII GATC 4 cut(s) 570, 595, 643, 664
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 4 cut(s) 87, 270, 369, 448
EarI CTCTTC 4 cut(s) 87, 270, 369, 448
Eco130I CCWWGG 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 90, 336
EcoRII CCWGG 5 cut(s) 62, 131, 211, 420, 653
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 4 cut(s) 49, 146, 193, 433
FaiI YATR 9 cut(s) 47, 144, 191, 266, 311, 372, 431, 642, 660
FatI CATG 4 cut(s) 45, 142, 189, 429
FblI GTMKAC 2 cut(s) 54, 659
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 2 cut(s) 598, 713
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 576
HaeIII GGCC 1 cut(s) 606
HapII CCGG 1 cut(s) 615
Hin1II CATG 4 cut(s) 49, 146, 193, 433
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 6 cut(s) 95, 107, 128, 182, 278, 716
HpaII CCGG 1 cut(s) 615
HphI GGTGA 3 cut(s) 217, 541, 711
Hpy166II GTNNAC 5 cut(s) 55, 208, 349, 660, 752
Hpy188I TCNGA 6 cut(s) 28, 70, 91, 100, 112, 638
Hpy188III TCNNGA 4 cut(s) 245, 668, 728, 740
Hpy8I GTNNAC 5 cut(s) 55, 208, 349, 660, 752
HpyAV CCTTC 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 142, 578
HpyF3I CTNAG 5 cut(s) 99, 282, 387, 556, 726
Hsp92II CATG 4 cut(s) 49, 146, 193, 433
Kzo9I GATC 4 cut(s) 570, 595, 643, 664
Lsp1109I GCAGC 1 cut(s) 562
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 227, 242
MalI GATC 4 cut(s) 572, 597, 645, 666
MboI GATC 4 cut(s) 570, 595, 643, 664
MflI RGATCY 1 cut(s) 595
MlsI TGGCCA 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 2 cut(s) 104, 287
MnlI CCTC 2 cut(s) 451, 657
Mox20I TGGCCA 1 cut(s) 606
Mph1103I ATGCAT 1 cut(s) 144
MroXI GAANNNNTTC 2 cut(s) 546, 735
MscI TGGCCA 1 cut(s) 606
Msp20I TGGCCA 1 cut(s) 606
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 5 cut(s) 64, 133, 213, 422, 655
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 5 cut(s) 64, 133, 213, 422, 655
NcoI CCATGG 1 cut(s) 429
NdeII GATC 4 cut(s) 570, 595, 643, 664
NlaIII CATG 4 cut(s) 49, 146, 193, 433
NmuCI GTSAC 2 cut(s) 227, 242
NsiI ATGCAT 1 cut(s) 144
NspI RCATGY 2 cut(s) 49, 146
NspV TTCGAA 1 cut(s) 126
PciI ACATGT 1 cut(s) 45
PctI GAATGC 1 cut(s) 308
PdmI GAANNNNTTC 2 cut(s) 546, 735
PfeI GAWTC 4 cut(s) 107, 128, 182, 716
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 1 cut(s) 577
PleI GAGTC 2 cut(s) 103, 286
PpsI GAGTC 2 cut(s) 103, 286
PscI ACATGT 1 cut(s) 45
Psp6I CCWGG 5 cut(s) 62, 131, 211, 420, 653
PspGI CCWGG 5 cut(s) 62, 131, 211, 420, 653
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 2 cut(s) 545, 584
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 4 cut(s) 570, 595, 643, 664
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 2 cut(s) 104, 287
ScrFI CCNGG 5 cut(s) 64, 133, 213, 422, 655
SetI ASST 4 cut(s) 207, 316, 322, 547
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 2 cut(s) 576, 690
SfuI TTCGAA 1 cut(s) 126
SsiI CCGC 1 cut(s) 488
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 5 cut(s) 62, 131, 211, 420, 653
StyI CCWWGG 1 cut(s) 429
TaqI TCGA 4 cut(s) 126, 360, 468, 483
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 4 cut(s) 107, 128, 182, 716
TseFI GTSAC 2 cut(s) 227, 242
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 227, 242
TspGWI ACGGA 1 cut(s) 639
XceI RCATGY 2 cut(s) 49, 146
XmiI GTMKAC 2 cut(s) 54, 659
XmnI GAANNNNTTC 2 cut(s) 546, 735
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.