Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Forward (+)

3095420 .. 3099332

Gene Structure 3913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022539

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATAGTGAGCAAAGGTACAGTTTCCATCCCATCAAGCGGCACGTCCCCGGGACGTGGTCGTCATATGGGTCTGTCAGACGGTGGAACCTGTGCGATTTCAAGGTCCGGGAAAGGGCGGAGTGGGGATCTGAATGTGTTGAGAAGGGTGGCGGTATGGGTGGCTGGGTCTGGATGGAATTCTAGATCCGACCTGGATCGGGTCGGCCTTTTGGTTGAATTATCTGTGATCGTCGAGGTGACTGAATGGTGGTGGTATCCATCTGCCCACGGATCAGTATTGCTTTCACTTTTGTACATCAGATCTACTTCTGCTAAAGGTGTGTATCCACCCTATTTGAAGCTCATGCTGCTCCTGCAGGTAGATGGGAATGTTGTTCAGTTTGAGAGTGGGTGCTTAATCGAGACTGTTGTGGAAGGAACTGACATTGGACTTGTTCCTTTCAAGATCCGCATTTCAGAGGATGGCGAGCTCTTTGCTGTGGATTCTGTTAATAGCAACAATGTTCGGATTGCTCCTCCACTGTCCCAATGTATGCAAAAGTGTTTACTTTCAAGGTATCATTTATGCTCTTCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

194

Amino Acids

20.87

Weight (kDa)

8.31

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	349
AciI	CCGC	4 cut(s)	39, 118, 152, 451
AclWI	GGATC	5 cut(s)	135, 180, 204, 280, 442
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	2 cut(s)	19, 296
AfiI	CCNNNNNNNGG	4 cut(s)	38, 56, 114, 199
AgsI	TTSAA	5 cut(s)	102, 218, 340, 445, 555
AjiI	CACGTC	2 cut(s)	45, 56
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	343, 472
AluI	AGCT	2 cut(s)	343, 472
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	5 cut(s)	135, 180, 204, 280, 442
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	3 cut(s)	50, 51, 109
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	6 cut(s)	35, 40, 168, 268, 359, 458
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	2 cut(s)	267, 336
BcnI	CCSGG	3 cut(s)	50, 51, 109
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	349
BfuI	GTATCC	2 cut(s)	267, 336
BglII	AGATCT	1 cut(s)	302
BisI	GCNGC	2 cut(s)	40, 350
BlsI	GCNGC	2 cut(s)	41, 351
Bme1390I	CCNGG	4 cut(s)	50, 51, 109, 194
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	49
BmgBI	CACGTC	2 cut(s)	45, 56
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	4 cut(s)	50, 51, 109, 194
BpuMI	CCSGG	3 cut(s)	50, 51, 109
BsaJI	CCNNGG	3 cut(s)	48, 49, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 56, 114, 199
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	48, 49, 268
BseGI	GGATG	3 cut(s)	27, 179, 469
BseLI	CCNNNNNNNGG	4 cut(s)	38, 56, 114, 199
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	50, 108
BslFI	GGGAC	3 cut(s)	31, 66, 511
BslI	CCNNNNNNNGG	4 cut(s)	38, 56, 114, 199
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	3 cut(s)	31, 66, 511
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
BspACI	CCGC	4 cut(s)	39, 118, 152, 451
BspANI	GGCC	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	5 cut(s)	135, 180, 204, 280, 442
BspQI	GCTCTTC	1 cut(s)	577
BsrGI	TGTACA	1 cut(s)	294
BssECI	CCNNGG	3 cut(s)	48, 49, 268
BssMI	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	4 cut(s)	22, 83, 409, 525
Bst6I	CTCTTC	1 cut(s)	577
BstAUI	TGTACA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	470
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	27, 179, 469
BstKTI	GATC	7 cut(s)	130, 188, 199, 231, 275, 305, 450
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 355
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	4 cut(s)	48, 49, 107, 192
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	4 cut(s)	127, 185, 302, 447
BstYI	RGATCY	4 cut(s)	127, 185, 302, 447
BsuI	GTATCC	2 cut(s)	267, 336
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	268
BtrI	CACGTC	2 cut(s)	45, 56
BtsCI	GGATG	3 cut(s)	27, 179, 469
BtsIMutI	CAGTG	1 cut(s)	521
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	105
Cfr9I	CCCGGG	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	18, 295
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	4 cut(s)	164, 207, 343, 472
CviKI_1	RGCY	4 cut(s)	164, 207, 343, 472
CviQI	GTAC	2 cut(s)	18, 295
DpnI	GATC	7 cut(s)	129, 187, 198, 230, 274, 304, 449
DpnII	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
DrdI	GACNNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	472
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	1 cut(s)	349
FaiI	YATR	6 cut(s)	66, 68, 157, 347, 536, 568
FaqI	GGGAC	3 cut(s)	31, 66, 511
FatI	CATG	1 cut(s)	345
FauNDI	CATATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	40, 350
FokI	GGATG	3 cut(s)	14, 186, 476
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	40, 350
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	40, 350
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	50, 108
Hin1II	CATG	1 cut(s)	349
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	2 cut(s)	50, 108
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	6 cut(s)	79, 132, 190, 302, 460, 510
Hpy188III	TCNNGA	4 cut(s)	171, 183, 403, 445
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	138, 410
HpyCH4III	ACNGT	4 cut(s)	22, 83, 409, 525
HpyCH4IV	ACGT	2 cut(s)	44, 55
HpyCH4V	TGCA	2 cut(s)	358, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 355
HpySE526I	ACGT	2 cut(s)	44, 55
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
LguI	GCTCTTC	1 cut(s)	577
LmnI	GCTCC	2 cut(s)	357, 520
LpnPI	CCDG	9 cut(s)	63, 103, 121, 150, 156, 179, 206, 344, 368
Lsp1109I	GCAGC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	44, 55
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	7 cut(s)	129, 187, 198, 230, 274, 304, 449
MboI	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
MboII	GAAGA	1 cut(s)	564
MfeI	CAATTG	1 cut(s)	577
MflI	RGATCY	4 cut(s)	127, 185, 302, 447
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	3 cut(s)	178, 218, 577
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	229, 454, 528
MseI	TTAA	2 cut(s)	398, 492
MspI	CCGG	2 cut(s)	50, 108
MspR9I	CCNGG	4 cut(s)	50, 51, 109, 194
MunI	CAATTG	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	349, 355
NciI	CCSGG	3 cut(s)	50, 51, 109
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	41, 351
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	4 cut(s)	127, 185, 302, 447
PsyI	GACNNNGTC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	19, 296
RsaNI	GTAC	2 cut(s)	18, 295
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	398, 492
SatI	GCNGC	2 cut(s)	40, 350
Sau3AI	GATC	7 cut(s)	127, 185, 196, 228, 272, 302, 447
Sau96I	GGNCC	1 cut(s)	105
SbfI	CCTGCAGG	1 cut(s)	360
ScrFI	CCNGG	4 cut(s)	50, 51, 109, 194
SdaI	CCTGCAGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	105
SmaI	CCCGGG	1 cut(s)	51
Sse8387I	CCTGCAGG	1 cut(s)	360
Sse9I	AATT	3 cut(s)	178, 218, 577
SsiI	CCGC	4 cut(s)	39, 118, 152, 451
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	4 cut(s)	48, 49, 107, 192
TaaI	ACNGT	4 cut(s)	22, 83, 409, 525
TaiI	ACGT	2 cut(s)	47, 58
TaqI	TCGA	2 cut(s)	234, 402
TasI	AATT	3 cut(s)	178, 218, 577
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	398, 492
Tru9I	TTAA	2 cut(s)	398, 492
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	285
TspMI	CCCGGG	1 cut(s)	49
TspRI	CASTG	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	182
XmaI	CCCGGG	1 cut(s)	49
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.