Rmu_sc0025570.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025570.1
OG0001755
Physical Location & Seq
Reverse (-)
2 .. 574
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025570.1_g000001.1.cds

Sequence Viewer

Length: 516 bp
atggaacaaccatcttcctcagaaataaaggaagaaatcatcggtgaagaaaaaatcgatgaagatattgaactggttgaaataccagaaaatgaagaactggatctacttggccaaccatccggcaagtttgattataaagtcagatatgaccctccgtcatggttcaatgatccagagatcaacaagataattcctacagattgggatgatacaaaatcagctagttgtgctgcatcacccactcaggaaaatgttccaaaagaatgcaaaccattcattccgcaggaacaagctcaagaaaatgagcctcaacaatcgaaagtcgtctctacgagtagatacagcaactacatcgagattggactcaaattccctgatcaccggaaatatcatctacatgcttttgtagataatggatcaggttttactgttccaaagagatttgcaattccagatgaactctggaacgaagacaagaaaaagtcagctactggtgttacatttgatggaagc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

172

Amino Acids

19.61

Weight (kDa)

4.53

Isoelectric Point (pI)

64.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AciI CCGC 1 cut(s) 284
AclWI GGATC 3 cut(s) 111, 167, 427
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 371
AgsI TTSAA 3 cut(s) 71, 80, 169
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 3 cut(s) 224, 296, 491
AluI AGCT 3 cut(s) 224, 296, 491
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 3 cut(s) 111, 167, 427
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 56, 231, 374
BalI TGGCCA 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 19, 127, 503
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmeRI GACNNNNNGTC 1 cut(s) 157
BmsI GCATC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 384
Bse1I ACTGG 3 cut(s) 78, 105, 499
BseCI ATCGAT 1 cut(s) 57
BseGI GGATG 2 cut(s) 119, 214
BseMII CTCAG 2 cut(s) 33, 260
BseNI ACTGG 3 cut(s) 78, 105, 499
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 57
BsiSI CCGG 2 cut(s) 123, 385
BsmAI GTCTC 1 cut(s) 334
BsmBI CGTCTC 1 cut(s) 334
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 5 cut(s) 103, 172, 180, 379, 419
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 32, 259
BspDI ATCGAT 1 cut(s) 57
BspPI GGATC 3 cut(s) 111, 167, 427
BsrI ACTGG 3 cut(s) 78, 105, 499
BssMI GATC 5 cut(s) 103, 172, 180, 379, 419
Bst4CI ACNGT 1 cut(s) 433
BstDEI CTNAG 2 cut(s) 19, 246
BstF5I GGATG 2 cut(s) 119, 214
BstKTI GATC 5 cut(s) 106, 175, 183, 382, 422
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 5 cut(s) 103, 172, 180, 379, 419
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 2 cut(s) 119, 214
CaiI CAGNNNCTG 1 cut(s) 494
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 2 cut(s) 162, 401
CviJI RGCY 5 cut(s) 114, 224, 296, 310, 491
CviKI_1 RGCY 5 cut(s) 114, 224, 296, 310, 491
DdeI CTNAG 2 cut(s) 19, 246
DpnI GATC 5 cut(s) 105, 174, 182, 381, 421
DpnII GATC 5 cut(s) 103, 172, 180, 379, 419
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 2 cut(s) 165, 404
FaiI YATR 4 cut(s) 138, 150, 163, 402
FatI CATG 2 cut(s) 161, 400
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 106, 221
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 225
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 123, 385
Hin1II CATG 2 cut(s) 165, 404
HinfI GANTC 1 cut(s) 366
HpaII CCGG 2 cut(s) 123, 385
HphI GGTGA 3 cut(s) 56, 231, 374
Hpy188I TCNGA 2 cut(s) 22, 146
Hpy188III TCNNGA 6 cut(s) 176, 248, 299, 358, 455, 466
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4V TGCA 3 cut(s) 236, 270, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 19, 246
Hsp92II CATG 2 cut(s) 165, 404
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 5 cut(s) 103, 172, 180, 379, 419
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 499
MalI GATC 5 cut(s) 105, 174, 182, 381, 421
MboI GATC 5 cut(s) 103, 172, 180, 379, 419
MboII GAAGA 6 cut(s) 6, 44, 59, 74, 107, 485
MflI RGATCY 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 3 cut(s) 192, 371, 450
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 3 cut(s) 28, 165, 321
Mox20I TGGCCA 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 2 cut(s) 123, 385
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 5 cut(s) 103, 172, 180, 379, 419
NlaIII CATG 2 cut(s) 165, 404
NspI RCATGY 1 cut(s) 404
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PsiI TTATAA 1 cut(s) 138
PsrI GAACNNNNNNTAC 2 cut(s) 90, 122
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 399
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 5 cut(s) 103, 172, 180, 379, 419
SchI GAGTC 1 cut(s) 360
SetI ASST 4 cut(s) 226, 298, 427, 493
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 3 cut(s) 192, 371, 450
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 57, 320, 357
TasI AATT 3 cut(s) 192, 371, 450
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 4 cut(s) 75, 108, 268, 474
TspGWI ACGGA 1 cut(s) 147
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.