Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

67481704 .. 67482690

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0492200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAACGTAATGGAGGAGAAGACCAGAAAGCCAGTCTGGAAAAGAAGGCGAACGAGTGTATGCAGCTGAGCCTGGACGAGTCAGAGGCCCTGTTACGAATCGTCGTTCCAGCTCAGAGACCTGGCGAGTCGACCTTCTATGAGAATTTTGCTCTTAGAGGCATCCGAGTTGACCGAGTCGAACCCGGACTCATTATCTGTACTTTCAAGGTCCCTCCCCGTCTCACTGATAGAGCTGGAAATTTGGCCAATGGGGCAATTGCAAATCTTGTTGATGTAGTTGGATCATATGTAACTTATACTGGTGGTCTCATTAGGAATGTCTCGGTAGATATATCCATCTCGTACATGTCCACGGCAAAGCTTGATGATGAGGTAGAGATCACCTCGAAAAGATTAGGACAAAAAGGAGGTTATACTGGAATAATGGTGCTCCTGAGAAACAAAGCAACTGGGAACATCATTGCTGAAGGTCGACATTCCATGTTTCGTTTACACACTGCTCCGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

8.56

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	80 - 130	6.6e-06	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	131, 475
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	145, 241
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	202, 347
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	72, 121
AluBI	AGCT	4 cut(s)	67, 113, 236, 364
AluI	AGCT	4 cut(s)	67, 113, 236, 364
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	4 cut(s)	112, 227, 314, 328
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	87, 246
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	145, 241
AspS9I	GGNCC	2 cut(s)	88, 211
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	2 cut(s)	74, 123
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	4 cut(s)	112, 227, 314, 328
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	3 cut(s)	74, 123, 186
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	88, 211
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	3 cut(s)	74, 123, 186
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu1102I	GCTNAGC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	186
BsaI	GGTCTC	2 cut(s)	112, 314
BsaJI	CCNNGG	1 cut(s)	354
Bse1I	ACTGG	4 cut(s)	33, 307, 424, 457
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	74, 123
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	59, 128, 428
BseNI	ACTGG	4 cut(s)	33, 307, 424, 457
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	2 cut(s)	89, 248
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	197
BsmAI	GTCTC	4 cut(s)	112, 227, 314, 328
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	89, 248
Bso31I	GGTCTC	2 cut(s)	112, 314
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	284, 381
Bsp1720I	GCTNAGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	89, 248
BspCNI	CTCAG	3 cut(s)	60, 127, 429
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	2 cut(s)	112, 314
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	4 cut(s)	33, 307, 424, 457
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	284, 381
Bst2UI	CCWGG	2 cut(s)	74, 123
BstDEI	CTNAG	4 cut(s)	68, 114, 155, 437
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	287, 384
BstMAI	GTCTC	4 cut(s)	112, 227, 314, 328
BstMBI	GATC	2 cut(s)	284, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	74, 123
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	72, 121, 184
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	89, 248
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	225, 498
Cfr13I	GGNCC	2 cut(s)	88, 211
Csp6I	GTAC	2 cut(s)	201, 346
CviAII	CATG	2 cut(s)	349, 484
CviJI	RGCY	8 cut(s)	32, 67, 72, 89, 113, 236, 248, 364
CviKI_1	RGCY	8 cut(s)	32, 67, 72, 89, 113, 236, 248, 364
CviQI	GTAC	2 cut(s)	201, 346
DdeI	CTNAG	4 cut(s)	68, 114, 155, 437
DpnI	GATC	2 cut(s)	286, 383
DpnII	GATC	2 cut(s)	284, 381
EaeI	YGGCCR	1 cut(s)	246
Eco31I	GGTCTC	2 cut(s)	112, 314
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	489
EcoO109I	RGGNCCY	2 cut(s)	88, 211
EcoRII	CCWGG	2 cut(s)	72, 121
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	2 cut(s)	352, 487
FaiI	YATR	9 cut(s)	62, 141, 289, 291, 300, 335, 350, 417, 485
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	348, 483
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	2 cut(s)	131, 475
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	89, 248
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	2 cut(s)	352, 487
HincII	GTYRAC	3 cut(s)	132, 172, 476
HindII	GTYRAC	3 cut(s)	132, 172, 476
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	5 cut(s)	80, 99, 128, 177, 189
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	5 cut(s)	132, 172, 354, 476, 494
Hpy188I	TCNGA	4 cut(s)	85, 117, 167, 507
Hpy188III	TCNNGA	2 cut(s)	38, 436
Hpy8I	GTNNAC	5 cut(s)	132, 172, 354, 476, 494
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	40, 145, 464
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	64, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	4 cut(s)	68, 114, 155, 437
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	352, 487
Kzo9I	GATC	2 cut(s)	284, 381
LmnI	GCTCC	2 cut(s)	438, 508
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	93, 292
MalI	GATC	2 cut(s)	286, 383
MboI	GATC	2 cut(s)	284, 381
MboII	GAAGA	1 cut(s)	32
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	145, 241, 258
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	4 cut(s)	89, 137, 183, 186
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	7 cut(s)	8, 79, 152, 225, 367, 397, 404
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	74, 123, 186
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	74, 123
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	284, 381
NlaIII	CATG	2 cut(s)	352, 487
NlaIV	GGNNCC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	352
PciI	ACATGT	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	99
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	4 cut(s)	88, 136, 183, 185
PpsI	GAGTC	4 cut(s)	88, 136, 183, 185
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	72, 121
PspGI	CCWGG	2 cut(s)	72, 121
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	88, 211
PspPPI	RGGWCCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	202, 347
RsaNI	GTAC	2 cut(s)	201, 346
SalI	GTCGAC	2 cut(s)	130, 474
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	284, 381
Sau96I	GGNCC	2 cut(s)	88, 211
SchI	GAGTC	4 cut(s)	89, 137, 183, 186
ScrFI	CCNGG	3 cut(s)	74, 123, 186
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	145, 241, 258
StyD4I	CCNGG	3 cut(s)	72, 121, 184
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	131, 180, 389, 475
TaqII	GACCGA	1 cut(s)	189
TasI	AATT	3 cut(s)	145, 241, 258
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	99
TscAI	CASTG	2 cut(s)	232, 505
TseI	GCWGC	1 cut(s)	64
TspRI	CASTG	2 cut(s)	232, 505
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	145, 241
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	131, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.