Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027653.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 606

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027653.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 523 bp

atgaaaggctacgaaatagcatattctgatgatgaagaagacgacaggtcagtctactctgcctggtatgaagaagaagaaacttcatcagaagaatctgagattgattcggaagtagagtacttcgaatccagacaaatgcataatggtctccctatgttctgtgaagagtctaagaagacttatcacaaagaatgcttcatagctgaagctagaagaaaaaccaagaatggacttgtcaaccagttggtcgaacaagaatatgaagagtattttgctgagaaaaaggcaaaagaagttgaaactctgttccaggaaaccatggaatcatcttccttagtaaaaaaggaagaaatcttcggtgaagatattgaactggttgaaaacccagaaactgctgaactggtaaaactaccagaaactgttcatctcttagaacgacaagagactactggcacgtgggatctacttggccaaccttcgggcaagtttgattacaaagtcagatatgatcctcctgcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

20.44

Weight (kDa)

4.39

Isoelectric Point (pI)

68.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	471, 506
AcoI	YGGCCR	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	228
AcvI	CACGTG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	302, 374, 383
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	62, 312
AluBI	AGCT	2 cut(s)	206, 212
AluI	AGCT	2 cut(s)	206, 212
Alw26I	GTCTC	2 cut(s)	155, 440
AlwI	GGATC	2 cut(s)	471, 506
AlwNI	CAGNNNCTG	2 cut(s)	395, 422
AoxI	GGCC	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	374
AsuII	TTCGAA	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	45, 185
BciT130I	CCWGG	2 cut(s)	64, 314
BcoDI	GTCTC	2 cut(s)	155, 440
BfaI	CTAG	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	64, 314
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	64, 314
BpiI	GAAGAC	2 cut(s)	45, 185
Bpu14I	TTCGAA	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	4 cut(s)	244, 381, 408, 457
BseBI	CCWGG	2 cut(s)	64, 314
BseDI	CCNNGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	90, 270
BseNI	ACTGG	4 cut(s)	244, 381, 408, 457
BshFI	GGCC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	155, 440
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	463, 511
Bsp19I	CCATGG	1 cut(s)	321
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	2 cut(s)	91, 271
BspPI	GGATC	2 cut(s)	471, 506
BspT104I	TTCGAA	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	155
BsrI	ACTGG	4 cut(s)	244, 381, 408, 457
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	463, 511
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	64, 314
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	2 cut(s)	162, 261
BstBAI	YACGTR	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	126
BstDEI	CTNAG	5 cut(s)	99, 174, 279, 337, 433
BstDSI	CCRYGG	1 cut(s)	321
BstKTI	GATC	2 cut(s)	466, 514
BstMAI	GTCTC	2 cut(s)	155, 440
BstMBI	GATC	2 cut(s)	463, 511
BstNI	CCWGG	2 cut(s)	64, 314
BstSCI	CCNGG	2 cut(s)	62, 312
BstV2I	GAAGAC	2 cut(s)	45, 185
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	321
CaiI	CAGNNNCTG	2 cut(s)	395, 422
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	4 cut(s)	9, 206, 212, 474
CviKI_1	RGCY	4 cut(s)	9, 206, 212, 474
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	5 cut(s)	99, 174, 279, 337, 433
DpnI	GATC	2 cut(s)	465, 513
DpnII	GATC	2 cut(s)	463, 511
DrdI	GACNNNNNNGTC	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	162, 261
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	2 cut(s)	162, 261
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	228
Eco72I	CACGTG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	62, 312
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	325
FaiI	YATR	8 cut(s)	22, 69, 144, 158, 203, 264, 323, 510
FatI	CATG	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	474
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	5 cut(s)	95, 107, 128, 170, 326
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	55, 241
Hpy188I	TCNGA	5 cut(s)	28, 91, 100, 112, 506
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	2 cut(s)	55, 241
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	1 cut(s)	142
HpyF3I	CTNAG	5 cut(s)	99, 174, 279, 337, 433
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	463, 511
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	458
MalI	GATC	2 cut(s)	465, 513
MboI	GATC	2 cut(s)	463, 511
MflI	RGATCY	1 cut(s)	463
MlsI	TGGCCA	1 cut(s)	474
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	179
Mox20I	TGGCCA	1 cut(s)	474
Mph1103I	ATGCAT	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	64, 314
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	2 cut(s)	64, 314
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	463, 511
NlaIII	CATG	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	126
PctI	GAATGC	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	95, 107, 128, 326
PfoI	TCCNGGA	1 cut(s)	312
PleI	GAGTC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	459
PmlI	CACGTG	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	62, 312
PspCI	CACGTG	1 cut(s)	459
PspGI	CCWGG	2 cut(s)	62, 312
PstNI	CAGNNNCTG	2 cut(s)	395, 422
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	463, 511
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	64, 314
SetI	ASST	5 cut(s)	50, 208, 214, 461, 481
SfuI	TTCGAA	1 cut(s)	126
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	62, 312
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	2 cut(s)	126, 252
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	4 cut(s)	95, 107, 128, 326
TspDTI	ATGAA	7 cut(s)	17, 48, 75, 84, 190, 279, 416
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.