Rmu_sc0002285.1_g000023

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002285.1
OG0001755
Physical Location & Seq
Forward (+)
85629 .. 86564
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002285.1_g000023.1.cds

Sequence Viewer

Length: 936 bp
atgaaaggctacgacatagcctattctgatgatgaagatgatgacaggtcagtttattctgcctggtctgaagaagaaacttcatcagatgagtctgagattgattctgaagtagagtacttcgaatccagacaaatgaatgttttgaaaataaaaaactgggaagaaagcaagacagaatccttcatgtcttcttaccaggtcaaccctggtacattcgtttgtgactactgcttatgtcacgaaaagaatggtcgccctatgttttgtgaagagtctaagaagacttatcacaaagaatgcttcatagttgaagcaagaagaaaaaccaagaatggtcttgtcagccagttggttgaacgagaatatgaagagtatttcgctgagaaaagggcgaaagaagtagaaactctgttccaggaaaccatggaaccatcttcctcagaaataaaggaagaaatcatcggaaaagaaagaatcgatgacgacattgaactggtcgaaataccagaaaatgtagaactcgtgaaaccaccagagtctgttcatctcttagaacgacaagagataactgcggatactgaaacatgggatctacttggccaaccatctggcaagtttgattataaagtcagatatgaccctccttcatggttcagtgatccagacatcgaagagataattcctacagactgggatgataaatcacccactcaggcaaatgttccagaaaaatgtaaaccattcattccaaaggaacaagctcaagaaaatgagcttcgtcaatcgaaggtcgtctctacaagtagatacagcaactacatagagattggactcaagttccctgatcatagaaaatatcatctacatgcctttgtagataatggatcgggatttactgttgcaaagagatttgcaattccagatgaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

311

Amino Acids

36.38

Weight (kDa)

4.58

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AciI CCGC 1 cut(s) 575
AclWI GGATC 3 cut(s) 600, 656, 895
AcoI YGGCCR 1 cut(s) 601
AcuI CTGAAG 2 cut(s) 90, 129
AfaI GTAC 2 cut(s) 119, 214
AgsI TTSAA 4 cut(s) 148, 314, 359, 494
AjnI CCWGG 4 cut(s) 62, 198, 208, 417
AluBI AGCT 2 cut(s) 764, 778
AluI AGCT 2 cut(s) 764, 778
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 3 cut(s) 600, 656, 895
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 1 cut(s) 601
AsuHPI GGTGA 1 cut(s) 699
AsuII TTCGAA 1 cut(s) 123
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 1 cut(s) 603
BauI CACGAG 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 183, 290
BccI CCATC 2 cut(s) 442, 616
BciT130I CCWGG 4 cut(s) 64, 200, 210, 419
BciVI GTATCC 1 cut(s) 571
BclI TGATCA 1 cut(s) 847
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 1 cut(s) 934
BfmI CTRYAG 1 cut(s) 687
BfuI GTATCC 1 cut(s) 571
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 4 cut(s) 64, 200, 210, 419
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 4 cut(s) 64, 200, 210, 419
BmrI ACTGGG 2 cut(s) 169, 703
BmuI ACTGGG 2 cut(s) 169, 703
BpiI GAAGAC 2 cut(s) 183, 290
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 750, 821
Bsa29I ATCGAT 1 cut(s) 480
BsaJI CCNNGG 2 cut(s) 208, 426
Bse1I ACTGG 4 cut(s) 164, 349, 501, 698
BseBI CCWGG 4 cut(s) 64, 200, 210, 419
BseCI ATCGAT 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 208, 426
BseGI GGATG 1 cut(s) 703
BseMII CTCAG 4 cut(s) 87, 375, 456, 728
BseNI ACTGG 4 cut(s) 164, 349, 501, 698
BshFI GGCC 1 cut(s) 603
BshVI ATCGAT 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 802
BsmBI CGTCTC 1 cut(s) 802
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 1 cut(s) 603
Bsp119I TTCGAA 1 cut(s) 123
Bsp143I GATC 4 cut(s) 592, 661, 847, 887
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 1 cut(s) 575
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 4 cut(s) 88, 376, 455, 727
BspDI ATCGAT 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 432
BspPI GGATC 3 cut(s) 600, 656, 895
BspT104I TTCGAA 1 cut(s) 123
BsrI ACTGG 4 cut(s) 164, 349, 501, 698
BssECI CCNNGG 2 cut(s) 208, 426
BssMI GATC 4 cut(s) 592, 661, 847, 887
BssSI CACGAG 1 cut(s) 524
BssT1I CCWWGG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 524
Bst2UI CCWGG 4 cut(s) 64, 200, 210, 419
Bst4CI ACNGT 1 cut(s) 901
Bst6I CTCTTC 3 cut(s) 267, 366, 669
BstBI TTCGAA 1 cut(s) 123
BstDEI CTNAG 6 cut(s) 96, 279, 384, 442, 553, 714
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 703
BstKTI GATC 4 cut(s) 595, 664, 850, 890
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 4 cut(s) 592, 661, 847, 887
BstNI CCWGG 4 cut(s) 64, 200, 210, 419
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 4 cut(s) 62, 198, 208, 417
BstSFI CTRYAG 1 cut(s) 687
BstV2I GAAGAC 2 cut(s) 183, 290
BstX2I RGATCY 1 cut(s) 592
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 1 cut(s) 592
Bsu15I ATCGAT 1 cut(s) 480
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 1 cut(s) 603
BsuTUI ATCGAT 1 cut(s) 480
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 542
ClaI ATCGAT 1 cut(s) 480
CsiI ACCWGGT 1 cut(s) 198
Csp6I GTAC 2 cut(s) 118, 213
CviAII CATG 5 cut(s) 187, 427, 588, 651, 869
CviJI RGCY 6 cut(s) 9, 20, 348, 603, 764, 778
CviKI_1 RGCY 6 cut(s) 9, 20, 348, 603, 764, 778
CviQI GTAC 2 cut(s) 118, 213
DdeI CTNAG 6 cut(s) 96, 279, 384, 442, 553, 714
DpnI GATC 4 cut(s) 594, 663, 849, 889
DpnII GATC 4 cut(s) 592, 661, 847, 887
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 3 cut(s) 267, 366, 669
EarI CTCTTC 3 cut(s) 267, 366, 669
Eco130I CCWWGG 1 cut(s) 426
Eco57I CTGAAG 2 cut(s) 90, 129
EcoRII CCWGG 4 cut(s) 62, 198, 208, 417
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 5 cut(s) 190, 430, 591, 654, 872
FatI CATG 5 cut(s) 186, 426, 587, 650, 868
FbaI TGATCA 1 cut(s) 847
FokI GGATG 1 cut(s) 710
FspBI CTAG 1 cut(s) 934
HaeIII GGCC 1 cut(s) 603
Hin1II CATG 5 cut(s) 190, 430, 591, 654, 872
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 8 cut(s) 92, 104, 125, 179, 275, 477, 539, 834
HphI GGTGA 1 cut(s) 699
Hpy166II GTNNAC 2 cut(s) 205, 740
Hpy188I TCNGA 8 cut(s) 28, 70, 88, 97, 109, 445, 467, 635
Hpy188III TCNNGA 8 cut(s) 129, 242, 526, 665, 728, 767, 891, 923
Hpy8I GTNNAC 2 cut(s) 205, 740
HpyAV CCTTC 3 cut(s) 193, 657, 784
HpyCH4III ACNGT 1 cut(s) 901
HpyCH4V TGCA 2 cut(s) 905, 917
HpyF3I CTNAG 6 cut(s) 96, 279, 384, 442, 553, 714
Hsp92II CATG 5 cut(s) 190, 430, 591, 654, 872
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 4 cut(s) 592, 661, 847, 887
MabI ACCWGGT 1 cut(s) 198
MaeI CTAG 1 cut(s) 934
MaeIII GTNAC 2 cut(s) 224, 239
MalI GATC 4 cut(s) 594, 663, 849, 889
MboI GATC 4 cut(s) 592, 661, 847, 887
MflI RGATCY 1 cut(s) 592
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 2 cut(s) 681, 918
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 4 cut(s) 101, 284, 548, 828
MnlI CCTC 2 cut(s) 451, 654
Mox20I TGGCCA 1 cut(s) 603
MscI TGGCCA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 867
Msp20I TGGCCA 1 cut(s) 603
MspR9I CCNGG 4 cut(s) 64, 200, 210, 419
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 4 cut(s) 64, 200, 210, 419
NcoI CCATGG 1 cut(s) 426
NdeII GATC 4 cut(s) 592, 661, 847, 887
NlaIII CATG 5 cut(s) 190, 430, 591, 654, 872
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 2 cut(s) 224, 239
NspI RCATGY 1 cut(s) 872
NspV TTCGAA 1 cut(s) 123
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 4 cut(s) 104, 125, 179, 477
PfoI TCCNGGA 1 cut(s) 417
PleI GAGTC 4 cut(s) 100, 283, 547, 828
PpsI GAGTC 4 cut(s) 100, 283, 547, 828
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 4 cut(s) 62, 198, 208, 417
PspGI CCWGG 4 cut(s) 62, 198, 208, 417
PspN4I GGNNCC 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 592
RsaI GTAC 2 cut(s) 119, 214
RsaNI GTAC 2 cut(s) 118, 213
RseI CAYNNNNRTG 1 cut(s) 867
Sau3AI GATC 4 cut(s) 592, 661, 847, 887
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 4 cut(s) 101, 284, 548, 828
ScrFI CCNGG 4 cut(s) 64, 200, 210, 419
SetI ASST 5 cut(s) 50, 204, 766, 780, 795
SexAI ACCWGGT 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 687
SfuI TTCGAA 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 2 cut(s) 765, 836
SmoI CTYRAG 2 cut(s) 765, 836
Sse9I AATT 2 cut(s) 681, 918
SsiI CCGC 1 cut(s) 575
SspMI CTAG 1 cut(s) 934
StyD4I CCNGG 4 cut(s) 62, 198, 208, 417
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 901
TaqI TCGA 5 cut(s) 123, 480, 501, 672, 788
TasI AATT 2 cut(s) 681, 918
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 4 cut(s) 104, 125, 179, 477
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 2 cut(s) 224, 239
Tsp45I GTSAC 2 cut(s) 224, 239
TspRI CASTG 1 cut(s) 664
XceI RCATGY 1 cut(s) 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 1 cut(s) 934
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.