RLG00000034490

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
43655354 .. 43656956
1603 bp
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UTR
Exon/CDS
Intron
RLM00000034490

Sequence Viewer

Length: 420 bp
ATGGTGGATGTTCCAGAGTTCAAGGCCTCCATTTCAGAGACGAATTGGAGCAACTCTGAAAGAAGTGTGGGGCCATTGATAAAGCACTTCTCTTCCCTTGTCAAGTGGACGAGGGCGACATCTACCAAAGCACCCCAATCAGATGGGAATGTTGTTCAGTTTGAGAGTGGGTACTTAGTCGAGACTGTTGTGGAAGGAACTGACATTGGAGTTGTTTCTTTCAAGATCCGCATTTCAGAGGATGGCGAGCTCTTTGCTGTGGATTCTGTTAATAGCAACATTGTTCGGATTACTCCTCCGTTGTCCCAATTTTATGCTTTTTCTACTTTGTCTACACTGTCCTATTCTGGATTGTTGTTTTTGAGCATTGGTGAGGTTATTTCATTATCATCAATGAGAGATCTCACCAAATTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.23

Weight (kDa)

4.91

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 332
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 410
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 2 cut(s) 22, 223
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 32, 176
AlwI GGATC 1 cut(s) 220
AoxI GGCC 2 cut(s) 24, 71
ApoI RAATTY 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 383, 397
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 2 cut(s) 137, 236
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BcoDI GTCTC 2 cut(s) 32, 176
BglII AGATCT 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 72
BseGI GGATG 2 cut(s) 13, 247
BseRI GAGGAG 1 cut(s) 285
BshFI GGCC 2 cut(s) 26, 73
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 289
BsmAI GTCTC 2 cut(s) 32, 176
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 26, 73
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 225, 400
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 26, 73
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 220
BssMI GATC 2 cut(s) 225, 400
Bst4CI ACNGT 2 cut(s) 187, 339
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 13, 247
BstKTI GATC 2 cut(s) 228, 403
BstMAI GTCTC 2 cut(s) 32, 176
BstMBI GATC 2 cut(s) 225, 400
BstX2I RGATCY 2 cut(s) 225, 400
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 2 cut(s) 225, 400
BsuRI GGCC 2 cut(s) 26, 73
BtsCI GGATG 2 cut(s) 13, 247
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 172
CviJI RGCY 3 cut(s) 26, 73, 250
CviKI_1 RGCY 3 cut(s) 26, 73, 250
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 227, 402
DpnII GATC 2 cut(s) 225, 400
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 32
FaiI YATR 1 cut(s) 315
FaqI GGGAC 1 cut(s) 289
FblI GTMKAC 1 cut(s) 332
FokI GGATG 2 cut(s) 20, 254
FriOI GRGCYC 1 cut(s) 252
HaeIII GGCC 2 cut(s) 26, 73
HinfI GANTC 1 cut(s) 263
HphI GGTGA 2 cut(s) 383, 397
Hpy166II GTNNAC 2 cut(s) 108, 333
Hpy188I TCNGA 5 cut(s) 37, 58, 142, 238, 288
Hpy188III TCNNGA 4 cut(s) 14, 181, 223, 348
Hpy8I GTNNAC 2 cut(s) 108, 333
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 187, 339
HpyF3I CTNAG 1 cut(s) 175
Kzo9I GATC 2 cut(s) 225, 400
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 27, 333
MalI GATC 2 cut(s) 227, 402
MboI GATC 2 cut(s) 225, 400
MboII GAAGA 1 cut(s) 84
MflI RGATCY 2 cut(s) 225, 400
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 3 cut(s) 43, 308, 410
MnlI CCTC 5 cut(s) 37, 105, 232, 306, 367
MseI TTAA 2 cut(s) 270, 418
NdeII GATC 2 cut(s) 225, 400
NlaIV GGNNCC 1 cut(s) 72
PceI AGGCCT 1 cut(s) 26
PfeI GAWTC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 2 cut(s) 225, 400
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 270, 418
Sau3AI GATC 2 cut(s) 225, 400
Sau96I GGNCC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 252
SetI ASST 2 cut(s) 252, 378
SgeI CNNG 9 cut(s) 26, 34, 110, 115, 123, 193, 235, 259, 360
Sse9I AATT 3 cut(s) 43, 308, 410
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 1 cut(s) 229
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 26
TaaI ACNGT 2 cut(s) 187, 339
TaqI TCGA 1 cut(s) 180
TasI AATT 3 cut(s) 43, 308, 410
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 270, 418
Tru9I TTAA 2 cut(s) 270, 418
TscAI CASTG 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 342
XapI RAATTY 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.