Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

34727481 .. 34731447

Gene Structure 3967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG334600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTGGATGTTCCAGAGTTCAAGGCCTCCGTTTCAGAGACGAATTGGAGCAACTCCGAAAGAAGTCTGGTGTTATTTGGATTGGATTGTGTTTGCTCAGGGCCATTGATAAAGCACTTCTCTTCCCTTGTCAAGTGGACGAGGGCGGCATCTGCCAAAGCACCCCAATCAGATGGGAATGTTGTTAAGTTTGAGAGTGGGTACTTAGTCGAGACTATTGTGGAAGGAACTGACATTGGAGTTGTTCCTTTGAAGATCCGCATTTCAGAGGATGGCGAGCTCTTTGCTGTGGATTCTGTTAATAGCAACATTGTTCGGATTACTCCTCTGTTGTCCCAATTGAAACCCAAGCAGCCCAGGGACGTAGGGAAAATTCCCGATCGAGTTGCAATGGATGAAATTAATGGAAAGAAGCATCCTTACTGGGAGATTTATCCTATTCTCCAACAGATTAAGTATAAGCAAGCTACTTTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

159

Amino Acids

17.69

Weight (kDa)

6.73

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	146, 259
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	372
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	22, 253, 343
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	280, 467
AluI	AGCT	2 cut(s)	280, 467
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	32, 206
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	24, 101
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	372
AseI	ATTAAT	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	404, 436
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	167, 266
BcgI	CGANNNNNNTGC	4 cut(s)	266, 300, 368, 402
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	32, 206
BfaI	CTAG	1 cut(s)	478
BisI	GCNGC	2 cut(s)	147, 353
BlsI	GCNGC	2 cut(s)	148, 354
Bme1390I	CCNGG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	2 cut(s)	158, 424
BmuI	ACTGGG	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	356, 357
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	356, 357
BseGI	GGATG	4 cut(s)	13, 277, 400, 415
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	26, 103
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	319, 374
BsmAI	GTCTC	2 cut(s)	32, 206
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	319, 374
BsnI	GGCC	2 cut(s)	26, 103
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	255, 379
BspACI	CCGC	2 cut(s)	146, 259
BspANI	GGCC	2 cut(s)	26, 103
BspCNI	CTCAG	1 cut(s)	110
BspPI	GGATC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	356, 357
BssMI	GATC	2 cut(s)	255, 379
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	278, 465
BstDEI	CTNAG	2 cut(s)	97, 205
BstF5I	GGATG	4 cut(s)	13, 277, 400, 415
BstKTI	GATC	2 cut(s)	258, 382
BstMAI	GTCTC	2 cut(s)	32, 206
BstMBI	GATC	2 cut(s)	255, 379
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	26, 103
BtsCI	GGATG	4 cut(s)	13, 277, 400, 415
Cac8I	GCNNGC	2 cut(s)	278, 465
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	5 cut(s)	26, 103, 280, 355, 467
CviKI_1	RGCY	5 cut(s)	26, 103, 280, 355, 467
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	97, 205
DpnI	GATC	2 cut(s)	257, 381
DpnII	GATC	2 cut(s)	255, 379
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	32
FaiI	YATR	1 cut(s)	459
FaqI	GGGAC	2 cut(s)	319, 374
Fnu4HI	GCNGC	2 cut(s)	147, 353
FokI	GGATG	4 cut(s)	20, 284, 402, 407
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	147, 353
FspBI	CTAG	1 cut(s)	478
GluI	GCNGC	2 cut(s)	147, 353
HaeIII	GGCC	2 cut(s)	26, 103
HinfI	GANTC	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	5 cut(s)	37, 58, 172, 268, 318
Hpy188III	TCNNGA	3 cut(s)	14, 211, 377
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	97, 205
HpySE526I	ACGT	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	255, 379
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	6 cut(s)	27, 53, 84, 343, 370, 409
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	158, 424
MaeI	CTAG	1 cut(s)	478
MaeII	ACGT	1 cut(s)	363
MalI	GATC	2 cut(s)	257, 381
MboI	GATC	2 cut(s)	255, 379
MboII	GAAGA	2 cut(s)	114, 265
MfeI	CAATTG	1 cut(s)	338
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	4 cut(s)	43, 338, 372, 399
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	4 cut(s)	37, 135, 262, 336
MseI	TTAA	4 cut(s)	186, 300, 402, 453
MspR9I	CCNGG	1 cut(s)	358
MunI	CAATTG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	2 cut(s)	255, 379
PasI	CCCWGGG	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	148, 354
Ple19I	CGATCG	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	255
PvuI	CGATCG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	186, 300, 402, 453
SatI	GCNGC	2 cut(s)	147, 353
Sau3AI	GATC	2 cut(s)	255, 379
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	3 cut(s)	282, 366, 469
SfaNI	GCATC	2 cut(s)	158, 424
Sse9I	AATT	4 cut(s)	43, 338, 372, 399
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	146, 259
SspMI	CTAG	1 cut(s)	478
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	356
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	210, 382
TasI	AATT	4 cut(s)	43, 338, 372, 399
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	4 cut(s)	186, 300, 402, 453
Tru9I	TTAA	4 cut(s)	186, 300, 402, 453
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	1 cut(s)	372
XspI	CTAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.