Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000770.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

139694 .. 145389

Gene Structure 5696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000770.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggcgaagaagatggtggctacggtgagcccactccggtggttggagatcgtgatggaggagaaagtgtcctctagatccactttttctcatggagttcttgtttccttatgttcagcacccaacctcctcctccatctccgaatgtcaccgaaccgtcctcttcttcattcttcacctctgaccaaaaccagtctaagaacgaagaggagagagaggtcgggtgcgagggggccattgataaagcacttctcttcccttgtcaagtggacgagggcggcatctgccaaagcaccccaatctgatgggaatgttgttcagtttgagagtgggtacttagtcgagactgttgtggaaggaactgacattggagttgttcctttcaaaatccgcatttcagaggatggcgagctctttgctgtggattctgttaatagcaaccttgttcgaattactcctccgttgtcccaatcagaaataaaggaagaaaagatagatgaaaatatagaactggttgaaccaccagagaacaatctagaagaatgtaaaccattcattccacaagaacaagctcaagaaaatgagcttcaacaatcaaaagtcatctctactagtagatacagcaactacatagagattggattgaaattccctgatcacagaaagtatcttttacatgcatttgtagataatgaatcaggattcacagttgcaaaaagatttgcaattccagaagaactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

247

Amino Acids

27.78

Weight (kDa)

6.62

Isoelectric Point (pI)

68.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	278, 391
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	647
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	385, 518, 590, 646
AhlI	ACTAGT	1 cut(s)	611
AleI	CACNNNNGTG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	412, 572, 586
AluI	AGCT	3 cut(s)	412, 572, 586
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	647
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	37, 141, 168
AsuII	TTCGAA	1 cut(s)	448
BanII	GRGCYC	2 cut(s)	32, 414
Bbv12I	GWGCWC	1 cut(s)	414
BccI	CCATC	5 cut(s)	7, 49, 144, 299, 398
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	4 cut(s)	75, 536, 612, 742
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 87, 111, 117, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	192, 516
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	2 cut(s)	192, 516
BseRI	GAGGAG	5 cut(s)	74, 119, 122, 223, 447
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	32, 414
Bsp143I	GATC	3 cut(s)	48, 77, 655
BspACI	CCGC	2 cut(s)	278, 391
BspANI	GGCC	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	192, 516
BssMI	GATC	3 cut(s)	48, 77, 655
Bst4CI	ACNGT	4 cut(s)	25, 158, 349, 709
Bst6I	CTCTTC	3 cut(s)	168, 200, 259
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	197, 337
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	3 cut(s)	51, 80, 658
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	3 cut(s)	48, 77, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	77
BstXI	CCANNNNNNTGG	2 cut(s)	39, 305
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	92, 677
CviJI	RGCY	6 cut(s)	20, 30, 235, 412, 572, 586
CviKI_1	RGCY	6 cut(s)	20, 30, 235, 412, 572, 586
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	197, 337
DpnI	GATC	3 cut(s)	50, 79, 657
DpnII	GATC	3 cut(s)	48, 77, 655
Eam1104I	CTCTTC	3 cut(s)	168, 200, 259
EarI	CTCTTC	3 cut(s)	168, 200, 259
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	2 cut(s)	32, 414
Eco53kI	GAGCTC	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	2 cut(s)	32, 414
FaeI	CATG	2 cut(s)	95, 680
FaiI	YATR	5 cut(s)	93, 112, 506, 632, 678
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	2 cut(s)	91, 676
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	32, 414
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	4 cut(s)	75, 536, 612, 742
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	37
Hin1II	CATG	2 cut(s)	95, 680
HinfI	GANTC	3 cut(s)	425, 695, 702
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	3 cut(s)	37, 141, 168
Hpy166II	GTNNAC	2 cut(s)	270, 548
Hpy188I	TCNGA	5 cut(s)	143, 183, 304, 400, 475
Hpy188III	TCNNGA	7 cut(s)	52, 75, 343, 536, 575, 699, 731
Hpy8I	GTNNAC	2 cut(s)	270, 548
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	4 cut(s)	25, 158, 349, 709
HpyCH4V	TGCA	3 cut(s)	680, 713, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	197, 337
Hsp92II	CATG	2 cut(s)	95, 680
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	3 cut(s)	48, 77, 655
LpnPI	CCDG	6 cut(s)	50, 205, 497, 537, 666, 684
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	4 cut(s)	75, 536, 612, 742
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	3 cut(s)	50, 79, 657
MboI	GATC	3 cut(s)	48, 77, 655
MboII	GAAGA	9 cut(s)	19, 22, 155, 158, 165, 217, 246, 497, 551
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	32, 414
MluCI	AATT	3 cut(s)	450, 647, 726
MmeI	TCCRAC	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	682
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	37
MspI	CCGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	48, 77, 655
NlaIII	CATG	2 cut(s)	95, 680
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	448
OliI	CACNNNNGTG	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	425, 695, 702
PkrI	GCNGC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	3 cut(s)	48, 77, 655
Sau96I	GGNCC	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	32, 414
SetI	ASST	7 cut(s)	129, 181, 221, 414, 444, 574, 588
SfaNI	GCATC	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	3 cut(s)	450, 647, 726
SsiI	CCGC	2 cut(s)	278, 391
SspMI	CTAG	4 cut(s)	75, 536, 612, 742
SstI	GAGCTC	1 cut(s)	414
TaaI	ACNGT	4 cut(s)	25, 158, 349, 709
TaqI	TCGA	2 cut(s)	342, 448
TasI	AATT	3 cut(s)	450, 647, 726
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	425, 695, 702
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	4 cut(s)	158, 513, 544, 708
TspGWI	ACGGA	1 cut(s)	450
XapI	RAATTY	1 cut(s)	647
XbaI	TCTAGA	2 cut(s)	74, 535
XceI	RCATGY	1 cut(s)	680
XspI	CTAG	4 cut(s)	75, 536, 612, 742
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.