Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002187.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Forward (+)

25571 .. 26437

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002187.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgaaaggctatgaaatagtctattctgatgatgaagatgacgacaggtcagtctactctgcctggtctgaagaagaagaaatttcatcagaagagtctgagatagattctgaagtagagtacttcgaatccagacaaatgaatgttttgagaatcaaaaattgggaagaaagcaagacagaagcattaatgtcttcttatcaggtgaaccctggtacatttgtttgtgactactgcttatgtcacgaaaagaatggtctccctatgttttgtgaagagtctaagaagacttatcacaaagaatgtttcatagctgaagcaagaaggaaaaccaaaaatggccttgtcagccaattaattgaacaagaatatgaagaatatttctctgaacaaaaagagaaagaagaagaaaaagaggtagaaactctgttccaaaaaattatggaaccttctccccatcttcctccaaaaaaagaagaaatcatcgatgaagaaaaaatcgatgaaaattttgaactggtcgaaaaaccagaaaaaatagaactggtgaaaccaccagaaactgttcatctcttagaacgacaggaggttactaacacatgggatctacttggccaaccatctggcaagtttgattataaagtcagatatgaccttctgtcatggttcaataatccagaaagcaacgagataattcctacagactgggatgagacaaaaccctctagttttgacaaatcacctattcagaaaaattttccagaagaatgtaaaccattcatccctaaggaacaagctcaggaaaatgagcttcatcagtcaaaagtcgtctctactagtagatacagcaactacatagagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

34.16

Weight (kDa)

4.52

Isoelectric Point (pI)

67.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AasI	GACNNNNNNGTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	3 cut(s)	81, 508, 754
AcuI	CTGAAG	3 cut(s)	90, 132, 336
AfaI	GTAC	2 cut(s)	122, 217
AgsI	TTSAA	3 cut(s)	362, 515, 670
AhdI	GACNNNNNGTC	2 cut(s)	46, 658
AhlI	ACTAGT	1 cut(s)	836
AjnI	CCWGG	2 cut(s)	62, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	3 cut(s)	314, 797, 811
AluI	AGCT	3 cut(s)	314, 797, 811
Alw26I	GTCTC	3 cut(s)	263, 707, 835
AlwI	GGATC	1 cut(s)	612
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	340, 613
ApoI	RAATTY	3 cut(s)	81, 508, 754
AseI	ATTAAT	2 cut(s)	188, 356
Asp700I	GAANNNNTTC	1 cut(s)	564
AsuHPI	GGTGA	3 cut(s)	217, 559, 732
AsuII	TTCGAA	1 cut(s)	126
AxyI	CCTNAGG	1 cut(s)	786
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	186, 293
BccI	CCATC	2 cut(s)	465, 628
BciT130I	CCWGG	2 cut(s)	64, 213
BcoDI	GTCTC	3 cut(s)	263, 707, 835
BcuI	ACTAGT	1 cut(s)	836
BfaI	CTAG	2 cut(s)	726, 837
BfmI	CTRYAG	1 cut(s)	699
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	64, 213
BmeRI	GACNNNNNGTC	2 cut(s)	46, 658
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	64, 213
BmrI	ACTGGG	1 cut(s)	715
BmuI	ACTGGG	1 cut(s)	715
BpiI	GAAGAC	2 cut(s)	186, 293
Bpu10I	CCTNAGC	1 cut(s)	798
Bpu14I	TTCGAA	1 cut(s)	126
Bsa29I	ATCGAT	2 cut(s)	486, 501
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	211
Bse1I	ACTGG	3 cut(s)	522, 549, 710
Bse21I	CCTNAGG	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	64, 213
BseCI	ATCGAT	2 cut(s)	486, 501
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	715, 780
BseMII	CTCAG	2 cut(s)	90, 812
BseNI	ACTGG	3 cut(s)	522, 549, 710
BshFI	GGCC	2 cut(s)	342, 615
BshVI	ATCGAT	2 cut(s)	486, 501
BsmAI	GTCTC	3 cut(s)	263, 707, 835
BsmBI	CGTCTC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	342, 615
Bso31I	GGTCTC	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	604
BspANI	GGCC	2 cut(s)	342, 615
BspCNI	CTCAG	2 cut(s)	91, 811
BspDI	ATCGAT	2 cut(s)	486, 501
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	1 cut(s)	612
BspT104I	TTCGAA	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	3 cut(s)	522, 549, 710
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	64, 213
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	87, 270
BstBI	TTCGAA	1 cut(s)	126
BstDEI	CTNAG	5 cut(s)	99, 282, 574, 786, 798
BstF5I	GGATG	2 cut(s)	715, 780
BstKTI	GATC	1 cut(s)	607
BstMAI	GTCTC	3 cut(s)	263, 707, 835
BstMBI	GATC	1 cut(s)	604
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	2 cut(s)	64, 213
BstSCI	CCNGG	2 cut(s)	62, 211
BstSFI	CTRYAG	1 cut(s)	699
BstV2I	GAAGAC	2 cut(s)	186, 293
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	604
Bsu15I	ATCGAT	2 cut(s)	486, 501
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	2 cut(s)	342, 615
BsuTUI	ATCGAT	2 cut(s)	486, 501
BtsCI	GGATG	2 cut(s)	715, 780
CaiI	CAGNNNCTG	1 cut(s)	563
ClaI	ATCGAT	2 cut(s)	486, 501
Csp6I	GTAC	2 cut(s)	121, 216
CviAII	CATG	2 cut(s)	600, 663
CviJI	RGCY	7 cut(s)	9, 314, 342, 351, 615, 797, 811
CviKI_1	RGCY	7 cut(s)	9, 314, 342, 351, 615, 797, 811
CviQI	GTAC	2 cut(s)	121, 216
DdeI	CTNAG	5 cut(s)	99, 282, 574, 786, 798
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
DrdI	GACNNNNNNGTC	1 cut(s)	50
DriI	GACNNNNNGTC	2 cut(s)	46, 658
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	87, 270
Eam1105I	GACNNNNNGTC	2 cut(s)	46, 658
EarI	CTCTTC	2 cut(s)	87, 270
Eco31I	GGTCTC	1 cut(s)	263
Eco57I	CTGAAG	3 cut(s)	90, 132, 336
Eco81I	CCTNAGG	1 cut(s)	786
EcoRII	CCWGG	2 cut(s)	62, 211
Esp3I	CGTCTC	1 cut(s)	835
FaeI	CATG	2 cut(s)	603, 666
FatI	CATG	2 cut(s)	599, 662
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	2 cut(s)	722, 767
FspBI	CTAG	2 cut(s)	726, 837
HaeIII	GGCC	2 cut(s)	342, 615
Hin1II	CATG	2 cut(s)	603, 666
HinfI	GANTC	5 cut(s)	95, 107, 128, 153, 278
HphI	GGTGA	3 cut(s)	217, 559, 732
Hpy166II	GTNNAC	3 cut(s)	55, 208, 773
Hpy188I	TCNGA	8 cut(s)	28, 70, 91, 100, 112, 388, 647, 750
Hpy188III	TCNNGA	5 cut(s)	132, 245, 677, 761, 800
Hpy8I	GTNNAC	3 cut(s)	55, 208, 773
HpyAV	CCTTC	3 cut(s)	318, 459, 665
HpyCH4III	ACNGT	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	5 cut(s)	99, 282, 574, 786, 798
Hsp92II	CATG	2 cut(s)	603, 666
Kzo9I	GATC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	726, 837
MaeIII	GTNAC	3 cut(s)	227, 242, 589
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MflI	RGATCY	1 cut(s)	604
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	8 cut(s)	81, 160, 353, 357, 438, 508, 693, 754
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	2 cut(s)	104, 287
MnlI	CCTC	4 cut(s)	409, 474, 580, 733
Mox20I	TGGCCA	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	2 cut(s)	188, 356
Msp20I	TGGCCA	1 cut(s)	615
MspR9I	CCNGG	2 cut(s)	64, 213
MvaI	CCWGG	2 cut(s)	64, 213
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	1 cut(s)	604
NlaIII	CATG	2 cut(s)	603, 666
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	227, 242
NspV	TTCGAA	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	3 cut(s)	107, 128, 153
PleI	GAGTC	2 cut(s)	103, 286
PpsI	GAGTC	2 cut(s)	103, 286
PshBI	ATTAAT	2 cut(s)	188, 356
PsiI	TTATAA	1 cut(s)	639
Psp6I	CCWGG	2 cut(s)	62, 211
PspGI	CCWGG	2 cut(s)	62, 211
PspN4I	GGNNCC	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	2 cut(s)	122, 217
RsaNI	GTAC	2 cut(s)	121, 216
SaqAI	TTAA	2 cut(s)	188, 356
Sau3AI	GATC	1 cut(s)	604
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	2 cut(s)	104, 287
ScrFI	CCNGG	2 cut(s)	64, 213
SfcI	CTRYAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	126
SpeI	ACTAGT	1 cut(s)	836
Sse9I	AATT	8 cut(s)	81, 160, 353, 357, 438, 508, 693, 754
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	2 cut(s)	726, 837
StyD4I	CCNGG	2 cut(s)	62, 211
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	4 cut(s)	126, 486, 501, 522
TasI	AATT	8 cut(s)	81, 160, 353, 357, 438, 508, 693, 754
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	107, 128, 153
Tru1I	TTAA	2 cut(s)	188, 356
Tru9I	TTAA	2 cut(s)	188, 356
TseFI	GTSAC	2 cut(s)	227, 242
Tsp45I	GTSAC	2 cut(s)	227, 242
VspI	ATTAAT	2 cut(s)	188, 356
XapI	RAATTY	3 cut(s)	81, 508, 754
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	2 cut(s)	726, 837
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.