Rmu_sc0003467.1_g000008

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003467.1
Physical Location & Seq
Reverse (-)
24833 .. 25186
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003467.1_g000008.1.cds

Sequence Viewer

Length: 354 bp
atggaaccatcttcctcaaaagtaaaggaagaagaaatcaatgaagaaaaactcgatgaaaatattgaactggttgaaccaccagaaattgttccagaagaatgcaaaccattcataccacaggaacatgctcgggaaaatgagcttcaacaatcgaaagtcgtctctactagtaggtacagcaactacatagagattggactcaaattccctgatcataagaaatatcatctacatgcatttgtagataatgggtcaggattcacttttgcaaagagatttgcaattccaaactctagaaagaagataagaaaagaacagctactggtgtcacctttgacagaagtcacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.57

Weight (kDa)

5.61

Isoelectric Point (pI)

76.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 1 cut(s) 179
AgsI TTSAA 3 cut(s) 68, 77, 149
AhlI ACTAGT 1 cut(s) 170
AluBI AGCT 2 cut(s) 145, 322
AluI AGCT 2 cut(s) 145, 322
Alw26I GTCTC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 132
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 324, 340
AvaI CYCGRG 1 cut(s) 132
BccI CCATC 1 cut(s) 16
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 2 cut(s) 171, 297
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 6
BoxI GACNNNNGTC 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 75, 330
BseNI ACTGG 2 cut(s) 75, 330
BsiHKCI CYCGRG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 2 cut(s) 75, 330
BssMI GATC 1 cut(s) 214
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 214
BstNSI RCATGY 2 cut(s) 131, 239
BstPAI GACNNNNGTC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 325
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 128, 236
CviJI RGCY 2 cut(s) 145, 322
CviKI_1 RGCY 2 cut(s) 145, 322
CviQI GTAC 1 cut(s) 178
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 131, 239
FaiI YATR 5 cut(s) 116, 129, 191, 219, 237
FatI CATG 2 cut(s) 127, 235
FbaI TGATCA 1 cut(s) 214
FspBI CTAG 2 cut(s) 171, 297
Hin1II CATG 2 cut(s) 131, 239
HinfI GANTC 2 cut(s) 201, 261
HphI GGTGA 2 cut(s) 324, 340
Hpy188III TCNNGA 4 cut(s) 95, 134, 258, 297
HpyCH4V TGCA 4 cut(s) 105, 239, 272, 284
Hsp92II CATG 2 cut(s) 131, 239
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 7 cut(s) 56, 96, 107, 108, 225, 243, 311
MaeI CTAG 2 cut(s) 171, 297
MaeIII GTNAC 2 cut(s) 330, 346
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 6 cut(s) 3, 41, 44, 56, 110, 316
MluCI AATT 3 cut(s) 87, 206, 285
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 1 cut(s) 25
Mph1103I ATGCAT 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 107
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 131, 239
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 330, 346
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 2 cut(s) 131, 239
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 261
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshAI GACNNNNGTC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 325
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 234
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 1 cut(s) 195
SetI ASST 5 cut(s) 147, 179, 324, 337, 353
SmiMI CAYNNNNRTG 1 cut(s) 234
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 3 cut(s) 87, 206, 285
SspI AATATT 1 cut(s) 64
SspMI CTAG 2 cut(s) 171, 297
TaqI TCGA 2 cut(s) 54, 155
TasI AATT 3 cut(s) 87, 206, 285
TfiI GAWTC 1 cut(s) 261
TseFI GTSAC 2 cut(s) 330, 346
Tsp45I GTSAC 2 cut(s) 330, 346
TspDTI ATGAA 3 cut(s) 57, 72, 103
XapI RAATTY 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 296
XceI RCATGY 2 cut(s) 131, 239
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 171, 297
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.