Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029502.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 793

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029502.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 793 bp

agaaacttcatcagaagagtctgagatagattctgaagtagagtacttcgaatccagacaaatgaatgttttaagaatcaagaattgggaagaaagcaagacagaagcattaatgtcttcttatcaggtgaaccttggtacattcgtttgtgactactgcttttgtcacgaaaagaatggtctccctatgttttgtgaagagtctaagaagacctatcacaaagaatgtttcatagctgaagcaagaaggaaaaccaaaaatggccttgtcagccaattaattgaacaagaatatgaagaatatttctctgaacaaaaagagaaagaagaagaaaaagaggtagaaactctgttcaaagaagtggaaactctgttccaggaaaccatggaacaatcttcctcctcaaaaaaggaagaaatcatcggtgaagaacaaatcgatgaagatattgaactagttgaaataccagaaaaagaagaactggtgaaaccaccagaaactgttcatctcttagaacgacaagaggttactgaaacatgggatctacttggccaaccatccggcaagtttgattacaaattcagatacgatcctccctcctggttaagtgatccagacagcaaagagataattcctacagactgggatgatacaaaaccttctagttttgataaatcacccactcagaaaaatgttccagaagaatgcaagccattcattccaaaggaacaagctcaagaaaatgagcttcaccaatcgaaggtcgtctctacaagtagatacagcaactac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

31.13

Weight (kDa)

4.5

Isoelectric Point (pI)

71.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	550, 585, 606
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	1 cut(s)	579
AcuI	CTGAAG	2 cut(s)	55, 259
AfaI	GTAC	2 cut(s)	45, 140
AfiI	CCNNNNNNNGG	1 cut(s)	761
AgsI	TTSAA	4 cut(s)	285, 356, 453, 462
AhlI	ACTAGT	1 cut(s)	455
AjnI	CCWGG	2 cut(s)	376, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	3 cut(s)	237, 735, 749
AluI	AGCT	3 cut(s)	237, 735, 749
Alw26I	GTCTC	2 cut(s)	186, 773
AlwI	GGATC	3 cut(s)	550, 585, 606
AlwNI	CAGNNNCTG	1 cut(s)	501
AoxI	GGCC	2 cut(s)	263, 551
ApoI	RAATTY	1 cut(s)	579
AseI	ATTAAT	2 cut(s)	111, 279
Asp700I	GAANNNNTTC	1 cut(s)	502
AsuHPI	GGTGA	5 cut(s)	140, 438, 497, 670, 744
AsuII	TTCGAA	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	130, 163
BalI	TGGCCA	1 cut(s)	553
BbsI	GAAGAC	2 cut(s)	109, 216
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	378, 602
BcoDI	GTCTC	2 cut(s)	186, 773
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	2 cut(s)	456, 664
BfmI	CTRYAG	1 cut(s)	637
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	2 cut(s)	378, 602
BmrFI	CCNGG	2 cut(s)	378, 602
BmrI	ACTGGG	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	2 cut(s)	109, 216
Bpu14I	TTCGAA	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	721
Bsa29I	ATCGAT	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	134, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse1I	ACTGG	2 cut(s)	487, 648
BseBI	CCWGG	2 cut(s)	378, 602
BseCI	ATCGAT	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	134, 385
BseGI	GGATG	2 cut(s)	558, 653
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMII	CTCAG	2 cut(s)	13, 699
BseNI	ACTGG	2 cut(s)	487, 648
BseRI	GAGGAG	1 cut(s)	392
BshFI	GGCC	2 cut(s)	265, 553
BshVI	ATCGAT	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	2 cut(s)	186, 773
BsmBI	CGTCTC	1 cut(s)	773
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	2 cut(s)	265, 553
Bso31I	GGTCTC	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	542, 590, 611
Bsp19I	CCATGG	1 cut(s)	385
BspANI	GGCC	2 cut(s)	265, 553
BspCNI	CTCAG	2 cut(s)	14, 698
BspDI	ATCGAT	1 cut(s)	439
BspPI	GGATC	3 cut(s)	550, 585, 606
BspT104I	TTCGAA	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	487, 648
BssECI	CCNNGG	2 cut(s)	134, 385
BssMI	GATC	3 cut(s)	542, 590, 611
BssT1I	CCWWGG	2 cut(s)	134, 385
Bst2UI	CCWGG	2 cut(s)	378, 602
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	2 cut(s)	10, 193
BstBI	TTCGAA	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	4 cut(s)	22, 205, 512, 685
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	558, 653
BstKTI	GATC	3 cut(s)	545, 593, 614
BstMAI	GTCTC	2 cut(s)	186, 773
BstMBI	GATC	3 cut(s)	542, 590, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	2 cut(s)	378, 602
BstSCI	CCNGG	2 cut(s)	376, 600
BstSFI	CTRYAG	1 cut(s)	637
BstV2I	GAAGAC	2 cut(s)	109, 216
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	265, 553
BsuTUI	ATCGAT	1 cut(s)	439
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	558, 653
Cac8I	GCNNGC	1 cut(s)	711
CaiI	CAGNNNCTG	1 cut(s)	501
ClaI	ATCGAT	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	44, 139
CviAII	CATG	2 cut(s)	386, 538
CviJI	RGCY	7 cut(s)	237, 265, 274, 553, 713, 735, 749
CviKI_1	RGCY	7 cut(s)	237, 265, 274, 553, 713, 735, 749
CviQI	GTAC	2 cut(s)	44, 139
DdeI	CTNAG	4 cut(s)	22, 205, 512, 685
DpnI	GATC	3 cut(s)	544, 592, 613
DpnII	GATC	3 cut(s)	542, 590, 611
EaeI	YGGCCR	1 cut(s)	551
Eam1104I	CTCTTC	2 cut(s)	10, 193
EarI	CTCTTC	2 cut(s)	10, 193
Eco130I	CCWWGG	2 cut(s)	134, 385
Eco31I	GGTCTC	1 cut(s)	186
Eco57I	CTGAAG	2 cut(s)	55, 259
EcoRII	CCWGG	2 cut(s)	376, 600
EcoT14I	CCWWGG	2 cut(s)	134, 385
ErhI	CCWWGG	2 cut(s)	134, 385
Esp3I	CGTCTC	1 cut(s)	773
FaeI	CATG	2 cut(s)	389, 541
FaiI	YATR	5 cut(s)	189, 234, 295, 387, 539
FatI	CATG	2 cut(s)	385, 537
FokI	GGATG	2 cut(s)	545, 660
FspBI	CTAG	2 cut(s)	456, 664
HaeIII	GGCC	2 cut(s)	265, 553
HapII	CCGG	1 cut(s)	562
Hin1II	CATG	2 cut(s)	389, 541
HinfI	GANTC	5 cut(s)	18, 30, 51, 76, 201
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	5 cut(s)	140, 438, 497, 670, 744
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	6 cut(s)	14, 23, 35, 311, 585, 688
Hpy188III	TCNNGA	6 cut(s)	55, 80, 168, 615, 699, 738
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	241, 670, 755
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	1 cut(s)	709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	4 cut(s)	22, 205, 512, 685
Hsp92II	CATG	2 cut(s)	389, 541
Kzo9I	GATC	3 cut(s)	542, 590, 611
MaeI	CTAG	2 cut(s)	456, 664
MaeIII	GTNAC	3 cut(s)	150, 165, 527
MalI	GATC	3 cut(s)	544, 592, 613
MboI	GATC	3 cut(s)	542, 590, 611
MflI	RGATCY	1 cut(s)	542
MlsI	TGGCCA	1 cut(s)	553
MluCI	AATT	5 cut(s)	83, 276, 280, 579, 631
MluNI	TGGCCA	1 cut(s)	553
MlyI	GAGTC	2 cut(s)	27, 210
MnlI	CCTC	6 cut(s)	332, 410, 413, 518, 604, 608
Mox20I	TGGCCA	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	553
MseI	TTAA	4 cut(s)	72, 111, 279, 606
Msp20I	TGGCCA	1 cut(s)	553
MspI	CCGG	1 cut(s)	562
MspR9I	CCNGG	2 cut(s)	378, 602
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	2 cut(s)	378, 602
MwoI	GCNNNNNNNGC	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	542, 590, 611
NlaIII	CATG	2 cut(s)	389, 541
NmuCI	GTSAC	2 cut(s)	150, 165
NspV	TTCGAA	1 cut(s)	49
PctI	GAATGC	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	3 cut(s)	30, 51, 76
PfoI	TCCNGGA	1 cut(s)	376
PleI	GAGTC	2 cut(s)	26, 209
PpsI	GAGTC	2 cut(s)	26, 209
PshBI	ATTAAT	2 cut(s)	111, 279
Psp6I	CCWGG	2 cut(s)	376, 600
PspGI	CCWGG	2 cut(s)	376, 600
PstNI	CAGNNNCTG	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	2 cut(s)	45, 140
RsaNI	GTAC	2 cut(s)	44, 139
SaqAI	TTAA	4 cut(s)	72, 111, 279, 606
Sau3AI	GATC	3 cut(s)	542, 590, 611
ScaI	AGTACT	1 cut(s)	45
SchI	GAGTC	2 cut(s)	27, 210
ScrFI	CCNGG	2 cut(s)	378, 602
SfcI	CTRYAG	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	5 cut(s)	83, 276, 280, 579, 631
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	2 cut(s)	456, 664
StyD4I	CCNGG	2 cut(s)	376, 600
StyI	CCWWGG	2 cut(s)	134, 385
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	3 cut(s)	49, 439, 759
TasI	AATT	5 cut(s)	83, 276, 280, 579, 631
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	30, 51, 76
Tru1I	TTAA	4 cut(s)	72, 111, 279, 606
Tru9I	TTAA	4 cut(s)	72, 111, 279, 606
TseFI	GTSAC	2 cut(s)	150, 165
Tsp45I	GTSAC	2 cut(s)	150, 165
TspDTI	ATGAA	6 cut(s)	78, 221, 310, 457, 495, 707
VspI	ATTAAT	2 cut(s)	111, 279
XapI	RAATTY	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	2 cut(s)	456, 664
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.