Rmu_sc0003249.1_g000027

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003249.1
Physical Location & Seq
Forward (+)
97225 .. 97686
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003249.1_g000027.1.cds

Sequence Viewer

Length: 462 bp
atgtcttcttatcaggtgaaccttggtacattcgtttgtgactactgcttatgtcacgaaaagaatggtctccctatgttttgtgaagagtcaaaaaagacttaccataaagaatgcttcatagctgaagcaagaagaaaaaccaaaaatagctttgtcagccaactgattgaacaagaatatgaagaatatttctctgaacaaaaagagaaagaagaagaaaaagaggtagaaactctgttccaaaaaattgtggaaccttctcctccatcttcctcaaaaataaaggaagaaatcatcggtgaagaaaaaatcgatgaagatattgaactggttgaaccaccagaaattgttccagaagaatgtaaaccattcattccaaaggagcaagctcaggaaaatgagcttcaacaatcgaaagtcgtctctaccaatagatacagcaactacatagagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.99

Weight (kDa)

4.63

Isoelectric Point (pI)

85.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 4 cut(s) 173, 329, 338, 410
AluBI AGCT 4 cut(s) 125, 153, 392, 406
AluI AGCT 4 cut(s) 125, 153, 392, 406
Alw26I GTCTC 2 cut(s) 74, 430
Asp700I GAANNNNTTC 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 28, 314
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BccI CCATC 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 74, 430
BmiI GGNNCC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 393
Bsa29I ATCGAT 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 255
BshVI ATCGAT 1 cut(s) 315
BsmAI GTCTC 2 cut(s) 74, 430
BsmBI CGTCTC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 393
BstMAI GTCTC 2 cut(s) 74, 430
BstMWI GCNNNNNNNGC 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 315
BsuTUI ATCGAT 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 390
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 5 cut(s) 125, 153, 162, 392, 406
CviKI_1 RGCY 5 cut(s) 125, 153, 162, 392, 406
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 430
FaiI YATR 6 cut(s) 52, 77, 108, 122, 183, 452
HinfI GANTC 1 cut(s) 89
HphI GGTGA 2 cut(s) 28, 314
Hpy166II GTNNAC 2 cut(s) 19, 368
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 3 cut(s) 56, 356, 395
Hpy8I GTNNAC 2 cut(s) 19, 368
HpyAV CCTTC 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 393
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 4 cut(s) 317, 357, 369, 380
MaeIII GTNAC 2 cut(s) 38, 53
MluCI AATT 2 cut(s) 249, 348
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 3 cut(s) 220, 276, 286
MroXI GAANNNNTTC 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 38, 53
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 351
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 258
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SchI GAGTC 1 cut(s) 98
SetI ASST 8 cut(s) 18, 24, 127, 155, 231, 262, 394, 408
Sse9I AATT 2 cut(s) 249, 348
SspI AATATT 1 cut(s) 191
StyI CCWWGG 1 cut(s) 22
TaqI TCGA 2 cut(s) 315, 416
TasI AATT 2 cut(s) 249, 348
TseFI GTSAC 2 cut(s) 38, 53
Tsp45I GTSAC 2 cut(s) 38, 53
TspDTI ATGAA 4 cut(s) 109, 198, 333, 364
XmnI GAANNNNTTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.