Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Forward (+)

54733717 .. 54761274

Gene Structure 27558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGACGTGAGGTCACCGTCCGGTTCAATTCGGTTCGACCCGCTGCAACTGTTACGACGTCGACTTCGTTGCCCGGTAGAGGCTTCAAGTGACGGGCCATTGATAAAGCACTTCTCTTCCCTTGTCAAGTGGATGAGGGCGGCATCTGCCAAAGCACCACAATTAGATGGGAATGTTGTTCAGTTTGAGAGTGGGTACTTAGTCGAGATTGTTGTGGAAGGAACTGACATTGGAGTTGTTCCTTTCAAGATCCGCATTTCAGAGGATGGCGAGCTCTTTGTTGTGGATTCTGTTAATAACAACATTGGTATGAAGGAGTATGGCATTACGGTTGGGTATAAAGAGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

5.84

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	3 cut(s)	41, 140, 253
AclWI	GGATC	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	27, 87, 247
AhdI	GACNNNNNGTC	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	7
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	161, 260
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	74
BisI	GCNGC	2 cut(s)	44, 141
BlsI	GCNGC	2 cut(s)	45, 142
Bme1390I	CCNGG	1 cut(s)	74
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	138, 271
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	21, 74
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	3 cut(s)	41, 140, 253
BspANI	GGCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	244
BssMI	GATC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	18, 51, 331
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	138, 271
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	138, 271
Cac8I	GCNNGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	3 cut(s)	83, 97, 274
CviKI_1	RGCY	3 cut(s)	83, 97, 274
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	274
Eco91I	GGTNACC	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	276
FaiI	YATR	3 cut(s)	311, 321, 339
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	44, 141
FokI	GGATG	2 cut(s)	145, 278
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	44, 141
GluI	GCNGC	2 cut(s)	44, 141
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	21, 74
Hin1I	GRCGYC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	2 cut(s)	21, 74
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	205, 247
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	2 cut(s)	60, 63
HpyAV	CCTTC	3 cut(s)	212, 307, 340
HpyCH4III	ACNGT	3 cut(s)	18, 51, 331
HpyCH4IV	ACGT	2 cut(s)	6, 58
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	2 cut(s)	6, 58
Hsp92I	GRCGYC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	249
LpnPI	CCDG	2 cut(s)	34, 87
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	2 cut(s)	6, 58
MaeIII	GTNAC	3 cut(s)	12, 51, 89
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	108
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	27, 161
MnlI	CCTC	4 cut(s)	3, 73, 129, 256
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	2 cut(s)	21, 74
MspR9I	CCNGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	12, 89
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	45, 142
Psp124BI	GAGCTC	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	276
SalI	GTCGAC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	44, 141
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	4 cut(s)	9, 14, 61, 276
SfaNI	GCATC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	2 cut(s)	27, 161
SsiI	CCGC	3 cut(s)	41, 140, 253
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	18, 51, 331
TaiI	ACGT	2 cut(s)	9, 61
TaqI	TCGA	3 cut(s)	36, 61, 204
TasI	AATT	2 cut(s)	27, 161
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseFI	GTSAC	2 cut(s)	12, 89
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	12, 89
TspDTI	ATGAA	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	61
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.