Rmu_sc0005069.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005069.1
OG0001755
Physical Location & Seq
Reverse (-)
93511 .. 94236
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005069.1_g000025.1.cds

Sequence Viewer

Length: 726 bp
atgaaaggctatgaaatagcctattctgatgacgaagaagatgacaggtcagtttactttgcctggacagactgtgaagaatcatctaactctgaaatagattctgaagtagaatacttggaatctagacaaatgaatgttctacatgtcaaaaactgggaagaaagtaagacggaatcaataacgtcttcttatcaggtgaaccctggtacattcctctgtgactactgcttatgtcaagaaaagaatggatttcttatgttctgtgaaaagtcaaaaaagacttatcataaagaatgcttcatagctgaagcaagaaggaaaaccaagaatggccttatcagccaattggtagaacaagaatatgaagaatatttctctaaacaaaaagagaaaaaggtaaaagttttgttccaagaaattatggaaccatcttcctcaaaaataaaggaagaagaaatcgataaagaaaaaatcgatgaaaatatagaactggttgaaccgccagcaattgttccagaagaatgcaaaccattcatacctcaggaacaagctcaggaaaatgagcttcaaccgtcaaaggtcgtctctactagtaaatacagcaactacatagagattggactaaaattctctgatcacaagaaatatcatctacatgcatttgtagataatggatcgggattcactgttgcaaaaagatttgcaattccagaagaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

28.16

Weight (kDa)

4.81

Isoelectric Point (pI)

64.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 503
AclWI GGATC 1 cut(s) 685
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 2 cut(s) 126, 330
AfaI GTAC 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 2 cut(s) 500, 572
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 2 cut(s) 62, 205
AluBI AGCT 3 cut(s) 308, 554, 568
AluI AGCT 3 cut(s) 308, 554, 568
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 1 cut(s) 685
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 629
AsuHPI GGTGA 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 1 cut(s) 439
BciT130I CCWGG 2 cut(s) 64, 207
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 592
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 3 cut(s) 126, 594, 724
Bme1390I CCNGG 2 cut(s) 64, 207
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 2 cut(s) 64, 207
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 555
Bsa29I ATCGAT 2 cut(s) 462, 477
BsaJI CCNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 161, 498
Bse21I CCTNAGG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 64, 207
BseCI ATCGAT 2 cut(s) 462, 477
BseDI CCNNGG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 557, 569
BseNI ACTGG 2 cut(s) 161, 498
BshFI GGCC 1 cut(s) 336
BshVI ATCGAT 2 cut(s) 462, 477
BsmAI GTCTC 1 cut(s) 592
BsmBI CGTCTC 1 cut(s) 592
BsmI GAATGC 2 cut(s) 302, 530
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 637, 677
BspACI CCGC 1 cut(s) 503
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 556, 568
BspDI ATCGAT 2 cut(s) 462, 477
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 1 cut(s) 685
BsrI ACTGG 2 cut(s) 161, 498
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 637, 677
Bst2UI CCWGG 2 cut(s) 64, 207
Bst4CI ACNGT 3 cut(s) 74, 576, 691
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 2 cut(s) 543, 555
BstKTI GATC 2 cut(s) 640, 680
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 2 cut(s) 637, 677
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 2 cut(s) 64, 207
BstNSI RCATGY 2 cut(s) 149, 662
BstSCI CCNGG 2 cut(s) 62, 205
BstV2I GAAGAC 1 cut(s) 180
Bsu15I ATCGAT 2 cut(s) 462, 477
Bsu36I CCTNAGG 1 cut(s) 543
BsuRI GGCC 1 cut(s) 336
BsuTUI ATCGAT 2 cut(s) 462, 477
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 1 cut(s) 507
ClaI ATCGAT 2 cut(s) 462, 477
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 146, 659
CviJI RGCY 7 cut(s) 9, 20, 308, 336, 345, 554, 568
CviKI_1 RGCY 7 cut(s) 9, 20, 308, 336, 345, 554, 568
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 543, 555
DpnI GATC 2 cut(s) 639, 679
DpnII GATC 2 cut(s) 637, 677
Eco57I CTGAAG 2 cut(s) 126, 330
Eco81I CCTNAGG 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 62, 205
EcoT22I ATGCAT 1 cut(s) 664
Esp3I CGTCTC 1 cut(s) 592
FaeI CATG 2 cut(s) 149, 662
FatI CATG 2 cut(s) 145, 658
FbaI TGATCA 1 cut(s) 637
FspBI CTAG 3 cut(s) 126, 594, 724
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 2 cut(s) 149, 662
HinfI GANTC 5 cut(s) 80, 101, 122, 176, 684
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 55, 202
Hpy188I TCNGA 4 cut(s) 28, 94, 106, 637
Hpy188III TCNNGA 7 cut(s) 126, 239, 518, 545, 557, 681, 713
Hpy8I GTNNAC 2 cut(s) 55, 202
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 3 cut(s) 74, 576, 691
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 528, 662, 695, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 2 cut(s) 543, 555
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 2 cut(s) 149, 662
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 2 cut(s) 637, 677
MaeI CTAG 3 cut(s) 126, 594, 724
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 639, 679
MboI GATC 2 cut(s) 637, 677
MfeI CAATTG 2 cut(s) 347, 510
MluCI AATT 5 cut(s) 347, 420, 510, 629, 708
MnlI CCTC 3 cut(s) 227, 448, 552
Mph1103I ATGCAT 1 cut(s) 664
MslI CAYNNNNRTG 1 cut(s) 657
MspR9I CCNGG 2 cut(s) 64, 207
MunI CAATTG 2 cut(s) 347, 510
Mva1269I GAATGC 2 cut(s) 302, 530
MvaI CCWGG 2 cut(s) 64, 207
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 2 cut(s) 637, 677
NlaIII CATG 2 cut(s) 149, 662
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 2 cut(s) 149, 662
PciI ACATGT 1 cut(s) 145
PctI GAATGC 2 cut(s) 302, 530
PfeI GAWTC 5 cut(s) 80, 101, 122, 176, 684
PscI ACATGT 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 62, 205
PspGI CCWGG 2 cut(s) 62, 205
PspN4I GGNNCC 1 cut(s) 429
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 657
Sau3AI GATC 2 cut(s) 637, 677
ScrFI CCNGG 2 cut(s) 64, 207
SetI ASST 9 cut(s) 50, 188, 201, 310, 402, 544, 556, 570, 585
SmiMI CAYNNNNRTG 1 cut(s) 657
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 5 cut(s) 347, 420, 510, 629, 708
SsiI CCGC 1 cut(s) 503
SspI AATATT 1 cut(s) 374
SspMI CTAG 3 cut(s) 126, 594, 724
StyD4I CCNGG 2 cut(s) 62, 205
TaaI ACNGT 3 cut(s) 74, 576, 691
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 462, 477
TasI AATT 5 cut(s) 347, 420, 510, 629, 708
TfiI GAWTC 5 cut(s) 80, 101, 122, 176, 684
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 7 cut(s) 17, 27, 149, 292, 381, 495, 526
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 694
XapI RAATTY 1 cut(s) 629
XbaI TCTAGA 1 cut(s) 125
XceI RCATGY 2 cut(s) 149, 662
XspI CTAG 3 cut(s) 126, 594, 724
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.