Rmu_sc0010686.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010686.1
Physical Location & Seq
Reverse (-)
80 .. 514
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010686.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atgaaaggctacgaaatagcctattcagatgatgaagaagataatgatgaagatgatgacagacaaatgaatgttttgaaaatccaaaactgggaagaaagcaagacagaatccttcatgtcttcttatcaggtcaaccctgatacattcgtctgtgactattgcttatgtcacgaaaagaatggtctccctatgttttgtgaagagtctaagaagacctatcacaaagaatgcttcatagctgaagcaagaagaaaaactaagaatggccttgtcagccaattggttgaacaagaatatgaagagtatttcgctgagaaaaaagagaaagaagttgaaactctgttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.87

Weight (kDa)

4.49

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 79, 290, 338
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BbsI GAAGAC 2 cut(s) 114, 221
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 349
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 2 cut(s) 114, 221
BsaI GGTCTC 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 95
BshFI GGCC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 191
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 95
Bst6I CTCTTC 2 cut(s) 198, 297
BstDEI CTNAG 3 cut(s) 210, 261, 315
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstV2I GAAGAC 2 cut(s) 114, 221
BsuRI GGCC 1 cut(s) 270
CviAII CATG 1 cut(s) 118
CviJI RGCY 5 cut(s) 9, 20, 242, 270, 279
CviKI_1 RGCY 5 cut(s) 9, 20, 242, 270, 279
DdeI CTNAG 3 cut(s) 210, 261, 315
Eam1104I CTCTTC 2 cut(s) 198, 297
EarI CTCTTC 2 cut(s) 198, 297
Eco31I GGTCTC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 264
FaeI CATG 1 cut(s) 121
FaiI YATR 5 cut(s) 119, 169, 194, 239, 300
FatI CATG 1 cut(s) 117
FspBI CTAG 1 cut(s) 349
HaeIII GGCC 1 cut(s) 270
Hin1II CATG 1 cut(s) 121
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 110, 206
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 3 cut(s) 210, 261, 315
Hsp92II CATG 1 cut(s) 121
LpnPI CCDG 3 cut(s) 76, 116, 153
MaeI CTAG 1 cut(s) 349
MaeIII GTNAC 2 cut(s) 155, 170
MboII GAAGA 9 cut(s) 47, 50, 62, 107, 114, 215, 226, 264, 314
MfeI CAATTG 1 cut(s) 281
MluCI AATT 1 cut(s) 281
MlyI GAGTC 1 cut(s) 215
MunI CAATTG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 276
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 155, 170
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 110
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
SchI GAGTC 1 cut(s) 215
SetI ASST 3 cut(s) 135, 221, 244
SgeI CNNG 9 cut(s) 103, 115, 130, 143, 152, 185, 261, 284, 305
Sse9I AATT 1 cut(s) 281
SspMI CTAG 1 cut(s) 349
TasI AATT 1 cut(s) 281
TfiI GAWTC 1 cut(s) 110
TseFI GTSAC 2 cut(s) 155, 170
Tsp45I GTSAC 2 cut(s) 155, 170
TspDTI ATGAA 7 cut(s) 17, 48, 63, 83, 106, 226, 315
XspI CTAG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.