Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002818.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

3085 .. 5320

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002818.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggcgaagaagatggtggctacggtgagcccactctggtggttggagatcgtgacgaaggagagagtgtcctccagatccactttgtctcgtggagttcttgtttcctttctgttaagcacccaacctcctcctccatctccgaacggcaccgaaccgtcctcttcttccttctccgcctcagaccaaaacccgtttaagaatgaagaggagagagaggtcgggtgcgaggggttagggctcaaagatggtggatgttccagagttcaaggccttcgtttcagagacgaattggagcaactccgaaagaagtctggatcagtacgacccaacttagaacaatttacagaaaagattaccaatttaaggccattgataaagcactactcttcctttgtcaagtggacgagggcggcatctgccaaagcaccccaatcaggtaaatatgaagtgactactgttttcgatgggaatgttattcagtttgagagtgggtacttagtcgagactgttatggaaggaactgagattggagttgttcctttcaagatccgcatttcagaggatggtgagctgtttgctgtggattctgttaatagcaacattgctcggattactcctccgttgtcccattttatgaaaaagtatttacttgcagttgacacatttacttcaaagtatttactttcaaggtatcatttatgctcttccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

238

Amino Acids

26.53

Weight (kDa)

8.91

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	3 cut(s)	177, 413, 553
AclWI	GGATC	3 cut(s)	72, 325, 544
AfaI	GTAC	2 cut(s)	324, 497
AfiI	CCNNNNNNNGG	2 cut(s)	366, 437
AgsI	TTSAA	4 cut(s)	269, 547, 675, 690
AleI	CACNNNNGTG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	574
AluI	AGCT	1 cut(s)	574
Alw26I	GTCTC	3 cut(s)	93, 279, 500
AlwI	GGATC	3 cut(s)	72, 325, 544
AoxI	GGCC	2 cut(s)	271, 368
AsuHPI	GGTGA	2 cut(s)	37, 581
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	32, 243
BauI	CACGAG	1 cut(s)	90
BccI	CCATC	5 cut(s)	7, 145, 242, 461, 560
BceAI	ACGGC	1 cut(s)	163
BcoDI	GTCTC	3 cut(s)	93, 279, 500
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 87, 112, 117, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 437
Bse3DI	GCAATG	1 cut(s)	603
BseGI	GGATG	2 cut(s)	260, 571
BseLI	CCNNNNNNNGG	2 cut(s)	366, 437
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	195, 516
BseRI	GAGGAG	4 cut(s)	120, 123, 224, 609
BshFI	GGCC	2 cut(s)	273, 370
BshNI	GGYRCC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	366, 437
BsmAI	GTCTC	3 cut(s)	93, 279, 500
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	273, 370
Bsp1286I	GDGCHC	2 cut(s)	32, 243
Bsp143I	GATC	4 cut(s)	48, 77, 317, 549
BspACI	CCGC	3 cut(s)	177, 413, 553
BspANI	GGCC	2 cut(s)	273, 370
BspCNI	CTCAG	2 cut(s)	194, 517
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	3 cut(s)	72, 325, 544
BspQI	GCTCTTC	1 cut(s)	712
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	603
BssMI	GATC	4 cut(s)	48, 77, 317, 549
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	4 cut(s)	25, 159, 460, 511
Bst6I	CTCTTC	4 cut(s)	169, 201, 394, 712
BstDEI	CTNAG	4 cut(s)	181, 334, 499, 525
BstF5I	GGATG	2 cut(s)	260, 571
BstKTI	GATC	4 cut(s)	51, 80, 320, 552
BstMAI	GTCTC	3 cut(s)	93, 279, 500
BstMBI	GATC	4 cut(s)	48, 77, 317, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstX2I	RGATCY	2 cut(s)	77, 549
BstXI	CCANNNNNNTGG	1 cut(s)	39
BstYI	RGATCY	2 cut(s)	77, 549
BsuRI	GGCC	2 cut(s)	273, 370
BtsCI	GGATG	2 cut(s)	260, 571
Csp6I	GTAC	2 cut(s)	323, 496
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviJI	RGCY	6 cut(s)	20, 30, 241, 273, 370, 574
CviKI_1	RGCY	6 cut(s)	20, 30, 241, 273, 370, 574
CviQI	GTAC	2 cut(s)	323, 496
DdeI	CTNAG	4 cut(s)	181, 334, 499, 525
DpnI	GATC	4 cut(s)	50, 79, 319, 551
DpnII	GATC	4 cut(s)	48, 77, 317, 549
Eam1104I	CTCTTC	4 cut(s)	169, 201, 394, 712
EarI	CTCTTC	4 cut(s)	169, 201, 394, 712
EciI	GGCGGA	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	32, 243
EcoT38I	GRGCYC	2 cut(s)	32, 243
Esp3I	CGTCTC	1 cut(s)	279
FaiI	YATR	4 cut(s)	447, 515, 638, 703
FaqI	GGGAC	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	267, 578
FriOI	GRGCYC	2 cut(s)	32, 243
Fsp4HI	GCNGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	273, 370
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	1 cut(s)	587
HphI	GGTGA	2 cut(s)	37, 581
Hpy166II	GTNNAC	2 cut(s)	405, 661
Hpy188I	TCNGA	6 cut(s)	144, 184, 284, 305, 562, 612
Hpy188III	TCNNGA	6 cut(s)	52, 75, 261, 315, 505, 547
Hpy8I	GTNNAC	2 cut(s)	405, 661
HpyAV	CCTTC	4 cut(s)	52, 181, 284, 512
HpyCH4III	ACNGT	4 cut(s)	25, 159, 460, 511
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	4 cut(s)	181, 334, 499, 525
Kzo9I	GATC	4 cut(s)	48, 77, 317, 549
LguI	GCTCTTC	1 cut(s)	712
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	22, 88, 274, 300, 423
LweI	GCATC	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	52, 451
MalI	GATC	4 cut(s)	50, 79, 319, 551
MboI	GATC	4 cut(s)	48, 77, 317, 549
MboII	GAAGA	7 cut(s)	19, 22, 156, 159, 218, 381, 699
MfeI	CAATTG	1 cut(s)	712
MflI	RGATCY	2 cut(s)	77, 549
MhlI	GDGCHC	2 cut(s)	32, 243
MluCI	AATT	4 cut(s)	290, 341, 361, 712
MmeI	TCCRAC	1 cut(s)	24
MseI	TTAA	4 cut(s)	116, 198, 365, 594
MslI	CAYNNNNRTG	1 cut(s)	37
MunI	CAATTG	1 cut(s)	712
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	4 cut(s)	48, 77, 317, 549
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	52, 451
OliI	CACNNNNGTG	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	151
PsuI	RGATCY	2 cut(s)	77, 549
RsaI	GTAC	2 cut(s)	324, 497
RsaNI	GTAC	2 cut(s)	323, 496
RseI	CAYNNNNRTG	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	712
SaqAI	TTAA	4 cut(s)	116, 198, 365, 594
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	48, 77, 317, 549
SduI	GDGCHC	2 cut(s)	32, 243
SetI	ASST	5 cut(s)	130, 222, 442, 576, 695
SfaNI	GCATC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	37
Sse9I	AATT	4 cut(s)	290, 341, 361, 712
SseBI	AGGCCT	1 cut(s)	273
SsiI	CCGC	3 cut(s)	177, 413, 553
StuI	AGGCCT	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	25, 159, 460, 511
TaqI	TCGA	2 cut(s)	465, 504
TasI	AATT	4 cut(s)	290, 341, 361, 712
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	4 cut(s)	116, 198, 365, 594
Tru9I	TTAA	4 cut(s)	116, 198, 365, 594
TseFI	GTSAC	2 cut(s)	52, 451
Tsp45I	GTSAC	2 cut(s)	52, 451
TspDTI	ATGAA	3 cut(s)	219, 462, 653
TspGWI	ACGGA	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.