FvH4_6g25072

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
18987312 .. 18988161
850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25072.t1

Sequence Viewer

Length: 756 bp
ATGGCAGAATATGAGGAAGCTATAAATTATGCTAATCTAAAAGGCTTTGAAGTTGTTTATTCTGATGAAGAGAATGAATCAATATATTCTCTTGAATACCCATCAGATAGTGAAACAGAAAATACTTCAGAAGGTTCTGAAGAAGATGAAAAAGAAATAGGACATCATCCTATATTTGTATTACAAATACAGAATTGGAAGGAAGAAAATGCTGATATTATCAGCACCTTTCATCCCAATCCTGGAAGATTTGTATGTGATTATTGCGAATGCGAAGATGATAGTACTATCCCCATGTACTGCGAAAGTACAGGAGAAACTTATCATCAAGAATGCTTTATTGCAGAACTCAGAAGAAAAACTAAAGATAGAGATGCTCATACCTTGGTAGAAAAGGAATATATTGTATTCCATAGAGAAGAACAAGAAAAAGATCTTAAAAAGGATATGAACACGATGAAGTTTATAACTTCATTAAGCCAAAACAAGAAGATAAAAGAGTCTTTTGACTTTCTTACTCCCACGATTGCTGGGACAAGTGCCAATCCGATAATTAGTATTAATCCTCCTGAGTCCATAACTGCTGAAAGACAAGTTAATCCTTTCACAGATTTACTTGTTGCTCCAAAAAAGCAAGAACAAATACTAGTTCAGGGTACTCTCTTGCCAAAAGATATGCTATCCCTGAAGAATTTTGGGAAAAATCTCCAAGAACAGTTACTGGAGTTGCCATGGAAGAAAACAAAATCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.99

Weight (kDa)

4.68

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 3 cut(s) 111, 159, 707
AfaI GTAC 4 cut(s) 286, 299, 310, 658
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 50, 95
AhlI ACTAGT 1 cut(s) 646
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 721
ApoI RAATTY 1 cut(s) 691
AseI ATTAAT 1 cut(s) 561
BccI CCATC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 243
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 1 cut(s) 647
BglII AGATCT 1 cut(s) 433
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 743
BsaJI CCNNGG 2 cut(s) 384, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 726
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 384, 731
BseGI GGATG 2 cut(s) 166, 232
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 2 cut(s) 364, 561
BseNI ACTGG 1 cut(s) 726
BseYI CCCAGC 1 cut(s) 530
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 547
BsmI GAATGC 2 cut(s) 275, 338
Bsp143I GATC 1 cut(s) 433
Bsp19I CCATGG 1 cut(s) 731
BspCNI CTCAG 2 cut(s) 363, 562
BspHI TCATGA 1 cut(s) 752
BsrI ACTGG 1 cut(s) 726
BssECI CCNNGG 2 cut(s) 384, 731
BssMI GATC 1 cut(s) 433
BssT1I CCWWGG 2 cut(s) 384, 731
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 717
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 350, 570
BstDSI CCRYGG 1 cut(s) 731
BstF5I GGATG 2 cut(s) 166, 232
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 731
BtsCI GGATG 2 cut(s) 166, 232
CaiI CAGNNNCTG 1 cut(s) 721
CciI TCATGA 1 cut(s) 752
Csp6I GTAC 4 cut(s) 285, 298, 309, 657
CviAII CATG 3 cut(s) 295, 732, 753
CviJI RGCY 3 cut(s) 20, 45, 480
CviKI_1 RGCY 3 cut(s) 20, 45, 480
CviQI GTAC 4 cut(s) 285, 298, 309, 657
DdeI CTNAG 2 cut(s) 350, 570
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 384, 731
Eco57I CTGAAG 3 cut(s) 111, 159, 707
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 384, 731
ErhI CCWWGG 2 cut(s) 384, 731
FaeI CATG 3 cut(s) 298, 735, 756
FaqI GGGAC 1 cut(s) 547
FatI CATG 3 cut(s) 294, 731, 752
FokI GGATG 2 cut(s) 153, 219
FspBI CTAG 1 cut(s) 647
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 743
Hin1II CATG 3 cut(s) 298, 735, 756
HinfI GANTC 3 cut(s) 77, 500, 572
Hpy188I TCNGA 6 cut(s) 64, 106, 130, 139, 353, 549
Hpy188III TCNNGA 4 cut(s) 92, 329, 569, 753
HpyAV CCTTC 2 cut(s) 125, 193
HpyCH4III ACNGT 1 cut(s) 717
HpyCH4V TGCA 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 350, 570
Hsp92II CATG 3 cut(s) 298, 735, 756
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 8 cut(s) 228, 255, 297, 516, 582, 638, 698, 707
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 647
MaeIII GTNAC 1 cut(s) 717
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MflI RGATCY 1 cut(s) 433
MluCI AATT 4 cut(s) 25, 193, 552, 691
MlyI GAGTC 2 cut(s) 509, 581
MnlI CCTC 2 cut(s) 7, 576
MseI TTAA 4 cut(s) 438, 476, 561, 597
MspR9I CCNGG 1 cut(s) 243
Mva1269I GAATGC 2 cut(s) 275, 338
MvaI CCWGG 1 cut(s) 243
NcoI CCATGG 1 cut(s) 731
NdeII GATC 1 cut(s) 433
NlaIII CATG 3 cut(s) 298, 735, 756
PagI TCATGA 1 cut(s) 752
PctI GAATGC 2 cut(s) 275, 338
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 241
PleI GAGTC 2 cut(s) 508, 580
PpsI GAGTC 2 cut(s) 508, 580
PshBI ATTAAT 1 cut(s) 561
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 721
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 4 cut(s) 286, 299, 310, 658
RsaNI GTAC 4 cut(s) 285, 298, 309, 657
SaqAI TTAA 4 cut(s) 438, 476, 561, 597
Sau3AI GATC 1 cut(s) 433
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 2 cut(s) 509, 581
ScrFI CCNGG 1 cut(s) 243
SetI ASST 4 cut(s) 22, 136, 230, 386
SfaNI GCATC 1 cut(s) 364
SpeI ACTAGT 1 cut(s) 646
Sse9I AATT 4 cut(s) 25, 193, 552, 691
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 2 cut(s) 384, 731
TaaI ACNGT 1 cut(s) 717
TasI AATT 4 cut(s) 25, 193, 552, 691
TatI WGTACW 3 cut(s) 284, 297, 308
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 4 cut(s) 438, 476, 561, 597
Tru9I TTAA 4 cut(s) 438, 476, 561, 597
TspDTI ATGAA 7 cut(s) 81, 90, 162, 221, 462, 464, 473
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 691
XspI CTAG 1 cut(s) 647
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.