FvH4_6g05922

T=7 icosahedral viral capsid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001755
Physical Location & Seq
Reverse (-)
3393107 .. 3394256
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05922.t1

Sequence Viewer

Length: 1065 bp
ATGTGTCCAAAGATTTTGGATACCCCAACACAATGGGGATGTCATATTCCTACAGAAAGAAAACACCGAAGGAGGTTCTCTAGCACCAAACATGATAAAAAATTTGCTTCTAAAAAGAAGTATAAGTTTAGGAAAAAGCCTGGATATAAGAAAGAACAATTTTCTCAAACTTCTCCTAAAAAGAGATTTTTCAAAAGGAAAAAGAAGACCAATTTTTCTTCTAGAGAAGAAAAGAAATGCAGATGTTGGCTTTGCAAGGCAGAAGGACATTATGCAAATGAATGTCCTAAAAAGGACAAGAGATCTTTTAAAGCCTTAATTGCTGAGTATGATGAAGCAATAGAGTATGCTAATTTAAAAGGCTTTGAAGTCGCTTATTCTGATGAAGAGAATGAATCAATATATTCTCTTGAGTACCCATCAGATAGTGAGACAGAAAGTACTTCAGAAAACTCTGAAGAAGAAGATATAGGAGATCGTCCTATATTTTTATTACAGATACAAAATTGGAAGGAAGAAAACACTGATATTATCAGTACCTTCCATCCCAATCTGGGAAGATTTATTTGTGACTATTGCAAATGTGATGATAATAATACAATTCCCATGTACTGTGAAGGTACAGGTGAAACTTATCATCGGGAATGTTTTATTGCAGAACTCAGAAGAAAAACCAAGGATAATGAAGCACATGTCCTGGTAGAAGAGGAATACGATGTATTCCATAAAAAAGAAAAAGAAAAAAACCTTGAAGAGGATATAAAAACAATGAAGTTTGTAACTTCATTAAGTCAGAACAGGGAAATCAAGGAATCTCTTGATTCTCTCAATTCCAGTTCCAATCCGATACTGGGTCTAGCAAATGACAATCCTCTAGAATCAAAAACTGCAGAAAGAATGGTCAATCCTTTCACAGAATTACTTGATGATCCAAGAAAGCAAGCAAGAATAATGCCAATACTGGTTCAGGGTTTAGTCTTGCTAAAAGATATGCTATCCCTAAAGAATATTGAGAAAAATCTCCAAGGACAGTTACTGGAGTTGCAATGGAAGAGAATAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

41.68

Weight (kDa)

8.15

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 923
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 429, 477
AfaI GTAC 5 cut(s) 416, 442, 538, 611, 622
AfiI CCNNNNNNNGG 3 cut(s) 554, 754, 851
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 3 cut(s) 193, 368, 752
AjnI CCWGG 2 cut(s) 139, 696
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 923
AlwNI CAGNNNCTG 1 cut(s) 1036
ApoI RAATTY 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 638
BbsI GAAGAC 1 cut(s) 212
BccI CCATC 2 cut(s) 427, 552
BciT130I CCWGG 2 cut(s) 141, 698
BciVI GTATCC 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 4 cut(s) 81, 222, 857, 875
BfmI CTRYAG 2 cut(s) 51, 888
BfuI GTATCC 1 cut(s) 13
BglII AGATCT 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 141, 698
BmrFI CCNGG 2 cut(s) 141, 698
BmrI ACTGGG 1 cut(s) 860
BmuI ACTGGG 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 1058
BpuEI CTTGAG 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 675, 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 754, 851
Bse1I ACTGG 4 cut(s) 834, 855, 966, 1041
Bse3DI GCAATG 1 cut(s) 1052
BseBI CCWGG 2 cut(s) 141, 698
BseDI CCNNGG 2 cut(s) 675, 1024
BseGI GGATG 2 cut(s) 44, 544
BseLI CCNNNNNNNGG 3 cut(s) 554, 754, 851
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 2 cut(s) 315, 676
BseNI ACTGG 4 cut(s) 834, 855, 966, 1041
BslI CCNNNNNNNGG 3 cut(s) 554, 754, 851
BsmAI GTCTC 1 cut(s) 425
Bsp143I GATC 3 cut(s) 302, 475, 928
BspCNI CTCAG 2 cut(s) 316, 675
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 1052
BsrI ACTGG 4 cut(s) 834, 855, 966, 1041
BssECI CCNNGG 2 cut(s) 675, 1024
BssMI GATC 3 cut(s) 302, 475, 928
BssT1I CCWWGG 2 cut(s) 675, 1024
Bst2UI CCWGG 2 cut(s) 141, 698
Bst4CI ACNGT 2 cut(s) 614, 1032
Bst6I CTCTTC 4 cut(s) 381, 699, 747, 1046
BstC8I GCNNGC 1 cut(s) 942
BstDEI CTNAG 2 cut(s) 324, 662
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 2 cut(s) 44, 544
BstKTI GATC 3 cut(s) 305, 478, 931
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 302, 475, 928
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 2 cut(s) 141, 698
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 2 cut(s) 139, 696
BstSFI CTRYAG 2 cut(s) 51, 888
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 1 cut(s) 302
BsuI GTATCC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 44, 544
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 942
CaiI CAGNNNCTG 1 cut(s) 1036
Csp6I GTAC 5 cut(s) 415, 441, 537, 610, 621
CviAII CATG 3 cut(s) 92, 607, 692
CviJI RGCY 4 cut(s) 139, 250, 314, 363
CviKI_1 RGCY 4 cut(s) 139, 250, 314, 363
CviQI GTAC 5 cut(s) 415, 441, 537, 610, 621
DdeI CTNAG 2 cut(s) 324, 662
DpnI GATC 3 cut(s) 304, 477, 930
DpnII GATC 3 cut(s) 302, 475, 928
DraI TTTAAA 2 cut(s) 310, 357
Eam1104I CTCTTC 4 cut(s) 381, 699, 747, 1046
EarI CTCTTC 4 cut(s) 381, 699, 747, 1046
Eco130I CCWWGG 2 cut(s) 675, 1024
Eco57I CTGAAG 2 cut(s) 429, 477
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoRII CCWGG 2 cut(s) 139, 696
EcoT14I CCWWGG 2 cut(s) 675, 1024
ErhI CCWWGG 2 cut(s) 675, 1024
FaeI CATG 3 cut(s) 95, 610, 695
FatI CATG 3 cut(s) 91, 606, 691
FokI GGATG 2 cut(s) 51, 531
FspBI CTAG 4 cut(s) 81, 222, 857, 875
GsuI CTGGAG 1 cut(s) 1058
Hin1II CATG 3 cut(s) 95, 610, 695
HinfI GANTC 4 cut(s) 395, 812, 821, 878
HphI GGTGA 1 cut(s) 638
Hpy188I TCNGA 7 cut(s) 382, 424, 448, 457, 665, 795, 846
Hpy188III TCNNGA 5 cut(s) 222, 410, 641, 818, 875
HpyAV CCTTC 5 cut(s) 63, 257, 505, 550, 611
HpyCH4III ACNGT 2 cut(s) 614, 1032
HpyCH4V TGCA 7 cut(s) 240, 255, 275, 579, 656, 890, 1045
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 2 cut(s) 324, 662
Hsp92II CATG 3 cut(s) 95, 610, 695
Kzo9I GATC 3 cut(s) 302, 475, 928
MaeI CTAG 4 cut(s) 81, 222, 857, 875
MaeIII GTNAC 3 cut(s) 569, 778, 1032
MalI GATC 3 cut(s) 304, 477, 930
MboI GATC 3 cut(s) 302, 475, 928
MflI RGATCY 1 cut(s) 302
MluCI AATT 9 cut(s) 101, 158, 211, 318, 352, 505, 600, 829, 917
MnlI CCTC 4 cut(s) 66, 700, 748, 882
MseI TTAA 4 cut(s) 309, 317, 356, 788
MspR9I CCNGG 2 cut(s) 141, 698
MvaI CCWGG 2 cut(s) 141, 698
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 3 cut(s) 302, 475, 928
NlaIII CATG 3 cut(s) 95, 610, 695
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 1 cut(s) 695
PciI ACATGT 1 cut(s) 691
PfeI GAWTC 4 cut(s) 395, 812, 821, 878
PscI ACATGT 1 cut(s) 691
Psp6I CCWGG 2 cut(s) 139, 696
PspGI CCWGG 2 cut(s) 139, 696
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 5 cut(s) 416, 442, 538, 611, 622
RsaNI GTAC 5 cut(s) 415, 441, 537, 610, 621
SaqAI TTAA 4 cut(s) 309, 317, 356, 788
Sau3AI GATC 3 cut(s) 302, 475, 928
ScaI AGTACT 1 cut(s) 442
ScrFI CCNGG 2 cut(s) 141, 698
SetI ASST 5 cut(s) 77, 542, 622, 628, 750
SfcI CTRYAG 2 cut(s) 51, 888
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 9 cut(s) 101, 158, 211, 318, 352, 505, 600, 829, 917
SspI AATATT 1 cut(s) 1009
SspMI CTAG 4 cut(s) 81, 222, 857, 875
StyD4I CCNGG 2 cut(s) 139, 696
StyI CCWWGG 2 cut(s) 675, 1024
TaaI ACNGT 2 cut(s) 614, 1032
TasI AATT 9 cut(s) 101, 158, 211, 318, 352, 505, 600, 829, 917
TatI WGTACW 2 cut(s) 440, 609
TfiI GAWTC 4 cut(s) 395, 812, 821, 878
Tru1I TTAA 4 cut(s) 309, 317, 356, 788
Tru9I TTAA 4 cut(s) 309, 317, 356, 788
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 7 cut(s) 294, 348, 399, 408, 699, 774, 785
TspRI CASTG 1 cut(s) 529
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 2 cut(s) 221, 874
XceI RCATGY 1 cut(s) 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XspI CTAG 4 cut(s) 81, 222, 857, 875
ZrmI AGTACT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.