Rmu_sc0000399.1_g000026

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000399.1
Physical Location & Seq
Reverse (-)
136874 .. 137476
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000399.1_g000026.1.cds

Sequence Viewer

Length: 603 bp
atgaagggttacgaaatagcctattctgatgatgatgaagaagacgataggtcagtttactttgcttggtctgaagaagaagactcatctgatgctgaaatagattctaaagtagaatacttagaatcgagacagatgaatgttctacatgtcaaaaactgggaagagagtaagatggaagcaatatcgtctgcttaccaagtgaaccctggtgcattcgtttgtgactactgcttatgttacgaaaagaatggacttcctatgttctgtgaaacgtcaaaaaagacttatcacaaagaatgcttcatagctgaagcaagaagaaaaaccaagaatggccttgtcagccaattagtagaacaagaatatgaagaatatttctctgagaaaaaagagaaagaattagaaacccagttccaagaaattacggaaccatcttcctcaaaagtaaaggaagaaaaaatcaaggaagaaaaccttgatacagttattgaatcagttaaaatcgaggaaaaactcgatacaactatagaactggttgaagtaccagaaaatattccagaaggatgtaaaccattcatacctcaggagcaagagctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

23.38

Weight (kDa)

4.4

Isoelectric Point (pI)

64.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 93, 333
AfaI GTAC 1 cut(s) 546
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 494, 542
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 311, 598
AluI AGCT 2 cut(s) 311, 598
Alw26I GTCTC 1 cut(s) 124
AoxI GGCC 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 555
AxyI CCTNAGG 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 48, 87
BccI CCATC 2 cut(s) 169, 442
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 528
Bme1390I CCNGG 1 cut(s) 210
BmeRI GACNNNNNGTC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 2 cut(s) 169, 406
BmsI GCATC 1 cut(s) 82
BmuI ACTGGG 2 cut(s) 169, 406
BpiI GAAGAC 2 cut(s) 48, 87
BsaJI CCNNGG 1 cut(s) 208
Bse1I ACTGG 3 cut(s) 164, 412, 540
Bse21I CCTNAGG 1 cut(s) 585
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 375, 599
BseNI ACTGG 3 cut(s) 164, 412, 540
BshFI GGCC 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 124
BsmI GAATGC 2 cut(s) 215, 305
BsnI GGCC 1 cut(s) 339
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 376, 598
BspLI GGNNCC 1 cut(s) 432
BsrI ACTGG 3 cut(s) 164, 412, 540
BssECI CCNNGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 121, 384, 585
BstF5I GGATG 1 cut(s) 572
BstMAI GTCTC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 528
BstV2I GAAGAC 2 cut(s) 48, 87
Bsu36I CCTNAGG 1 cut(s) 585
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 1 cut(s) 572
Csp6I GTAC 1 cut(s) 545
CviAII CATG 1 cut(s) 149
CviJI RGCY 5 cut(s) 20, 311, 339, 348, 598
CviKI_1 RGCY 5 cut(s) 20, 311, 339, 348, 598
CviQI GTAC 1 cut(s) 545
DdeI CTNAG 3 cut(s) 121, 384, 585
DriI GACNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 93, 333
Eco81I CCTNAGG 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 152
FaiI YATR 7 cut(s) 150, 238, 263, 308, 369, 530, 581
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FatI CATG 1 cut(s) 148
FokI GGATG 1 cut(s) 579
HaeIII GGCC 1 cut(s) 339
Hin1II CATG 1 cut(s) 152
HinfI GANTC 4 cut(s) 83, 104, 125, 494
Hpy166II GTNNAC 3 cut(s) 58, 205, 572
Hpy188I TCNGA 4 cut(s) 28, 73, 91, 385
Hpy188III TCNNGA 3 cut(s) 129, 560, 587
Hpy8I GTNNAC 3 cut(s) 58, 205, 572
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 3 cut(s) 121, 384, 585
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 1 cut(s) 152
LmnI GCTCC 1 cut(s) 589
LpnPI CCDG 8 cut(s) 145, 195, 222, 425, 521, 561, 572, 573
LweI GCATC 1 cut(s) 82
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 8, 224, 239
MluCI AATT 3 cut(s) 350, 401, 423
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 3 cut(s) 451, 502, 594
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 2 cut(s) 501, 601
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 2 cut(s) 215, 305
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 345
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PctI GAATGC 2 cut(s) 215, 305
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 104, 125, 494
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PscI ACATGT 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 432
RsaI GTAC 1 cut(s) 546
RsaNI GTAC 1 cut(s) 545
SaqAI TTAA 2 cut(s) 501, 601
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 53, 278, 313, 480, 586, 600
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 528
Sse9I AATT 3 cut(s) 350, 401, 423
SspI AATATT 2 cut(s) 377, 556
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 128, 507, 519
TasI AATT 3 cut(s) 350, 401, 423
TfiI GAWTC 3 cut(s) 104, 125, 494
Tru1I TTAA 2 cut(s) 501, 601
Tru9I TTAA 2 cut(s) 501, 601
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 6 cut(s) 17, 51, 152, 295, 384, 568
TspGWI ACGGA 1 cut(s) 443
XceI RCATGY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.