Rmu_ssc0000397.1_g000010

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000397.1
Physical Location & Seq
Forward (+)
49310 .. 49618
309 bp
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UTR
Exon/CDS
Intron
Rmu_ssc0000397.1_g000010.1.cds

Sequence Viewer

Length: 309 bp
atggaaccatcttcctcgaaaataaaggaagaaagcaccgatgaagaaaagatcgatgaggctatcgaactggttgaaacactagaaattgttccaaaagaatgtaaaccattcattccaaaggaacaagctcaagaaaaagagcttcaacaatcgaaagtcgtctctactagtagatacaacaactacatagagattaggctaaaattccctgatcacaaaaaatatcatctacatgcattcgtagataatggatcaggatttactgttgcaaagagatttgcaattccagaagtgtcacgcccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.81

Weight (kDa)

5.65

Isoelectric Point (pI)

64.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 206
AgsI TTSAA 2 cut(s) 77, 149
AhlI ACTAGT 1 cut(s) 170
AluBI AGCT 2 cut(s) 131, 145
AluI AGCT 2 cut(s) 131, 145
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 90
BccI CCATC 1 cut(s) 16
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 2 cut(s) 83, 171
BmiI GGNNCC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 54
BseNI ACTGG 1 cut(s) 75
BshVI ATCGAT 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 239
Bsp143I GATC 3 cut(s) 51, 214, 254
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 75
BssMI GATC 3 cut(s) 51, 214, 254
Bst4CI ACNGT 1 cut(s) 268
BstKTI GATC 3 cut(s) 54, 217, 257
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 3 cut(s) 51, 214, 254
BstNSI RCATGY 1 cut(s) 239
Bsu15I ATCGAT 1 cut(s) 54
BsuTUI ATCGAT 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 54
CviAII CATG 1 cut(s) 236
CviJI RGCY 4 cut(s) 62, 131, 145, 202
CviKI_1 RGCY 4 cut(s) 62, 131, 145, 202
DpnI GATC 3 cut(s) 53, 216, 256
DpnII GATC 3 cut(s) 51, 214, 254
EcoT22I ATGCAT 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 191, 237
FatI CATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 214
FspBI CTAG 2 cut(s) 83, 171
Hin1II CATG 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 107
Hpy188III TCNNGA 3 cut(s) 134, 258, 290
Hpy8I GTNNAC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 239, 272, 284
Hsp92II CATG 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 3 cut(s) 51, 214, 254
LpnPI CCDG 4 cut(s) 56, 225, 243, 303
MaeI CTAG 2 cut(s) 83, 171
MaeIII GTNAC 1 cut(s) 297
MalI GATC 3 cut(s) 53, 216, 256
MboI GATC 3 cut(s) 51, 214, 254
MboII GAAGA 3 cut(s) 3, 41, 56
MluCI AATT 3 cut(s) 87, 206, 285
MnlI CCTC 2 cut(s) 25, 52
Mph1103I ATGCAT 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 239
NdeII GATC 3 cut(s) 51, 214, 254
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 297
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 239
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 234
Sau3AI GATC 3 cut(s) 51, 214, 254
SetI ASST 2 cut(s) 133, 147
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 3 cut(s) 87, 206, 285
SspMI CTAG 2 cut(s) 83, 171
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 4 cut(s) 17, 54, 66, 155
TasI AATT 3 cut(s) 87, 206, 285
TseFI GTSAC 1 cut(s) 297
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 57, 103
XapI RAATTY 1 cut(s) 206
XceI RCATGY 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 83, 171
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.