Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006361.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

82279 .. 82827

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006361.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgtcttcttatcaggtgaaccctggtacattcgtttgtgactactgcctatgtcacgaaaagaatggtctccctatgttttgtgaagagtctaagaagacttatcacaaagaatgcttcatagctgaagcaagaagaaaaaccaagaatggccaggttagccaattggttgagcaagaatatgaagaatatttctctgaacaaaaagagaaagaagaagaaaaagaggtagaaattttgttccaaaaaattatggaaccttctcctcaatcttcctcgaaaaatgaagaaatcatcgatgaagatatcgaactggttgaaacaccagaaaatgttccaaaagaagaatgtaaaccattcatcccaaaggaacaagctcaagaaaatgagctttatcattcgaaaatcgtctctactagtagatacagcaactacatagagattggactaaaattccctgatcacaaaaaatataatctacatgcctttgtggataatggatcgggatttactgttgcaaagagatttgcaattccagatgaactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

21.28

Weight (kDa)

4.92

Isoelectric Point (pI)

68.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	234, 452
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	320
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	2 cut(s)	22, 153
AluBI	AGCT	3 cut(s)	125, 377, 391
AluI	AGCT	3 cut(s)	125, 377, 391
Alw26I	GTCTC	2 cut(s)	74, 415
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	1 cut(s)	151
ApoI	RAATTY	2 cut(s)	234, 452
Asp700I	GAANNNNTTC	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BalI	TGGCCA	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	24, 155
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	74, 415
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	2 cut(s)	417, 547
Bme1390I	CCNGG	2 cut(s)	24, 155
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	24, 155
BpiI	GAAGAC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	24, 155
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	74, 415
BsmBI	CGTCTC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	460, 500
BspANI	GGCC	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	460, 500
Bst2UI	CCWGG	2 cut(s)	24, 155
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	2 cut(s)	463, 503
BstMAI	GTCTC	2 cut(s)	74, 415
BstMBI	GATC	2 cut(s)	460, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	24, 155
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	22, 153
BstV2I	GAAGAC	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	482
CviJI	RGCY	5 cut(s)	125, 153, 162, 377, 391
CviKI_1	RGCY	5 cut(s)	125, 153, 162, 377, 391
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	462, 502
DpnII	GATC	2 cut(s)	460, 500
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	22, 153
EcoRV	GATATC	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	1 cut(s)	485
FaiI	YATR	8 cut(s)	52, 77, 122, 183, 254, 437, 474, 483
FatI	CATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	460
FokI	GGATG	1 cut(s)	347
FspBI	CTAG	2 cut(s)	417, 547
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	485
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	19, 353
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	4 cut(s)	56, 380, 504, 536
Hpy8I	GTNNAC	2 cut(s)	19, 353
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	2 cut(s)	518, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	460, 500
LpnPI	CCDG	7 cut(s)	9, 36, 140, 167, 299, 339, 471
MaeI	CTAG	2 cut(s)	417, 547
MaeIII	GTNAC	2 cut(s)	38, 53
MalI	GATC	2 cut(s)	462, 502
MboI	GATC	2 cut(s)	460, 500
MfeI	CAATTG	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	5 cut(s)	164, 234, 249, 452, 531
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	220, 276, 286
Mox20I	TGGCCA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	24, 155
MunI	CAATTG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	24, 155
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	2 cut(s)	460, 500
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	38, 53
NspI	RCATGY	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	401
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	22, 153
PspGI	CCWGG	2 cut(s)	22, 153
PspN4I	GGNNCC	1 cut(s)	258
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	460, 500
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	24, 155
SetI	ASST	7 cut(s)	18, 127, 159, 231, 262, 379, 393
SfuI	TTCGAA	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	5 cut(s)	164, 234, 249, 452, 531
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	2 cut(s)	417, 547
StyD4I	CCNGG	2 cut(s)	22, 153
TaaI	ACNGT	1 cut(s)	514
TaqI	TCGA	4 cut(s)	278, 297, 309, 401
TasI	AATT	5 cut(s)	164, 234, 249, 452, 531
TseFI	GTSAC	2 cut(s)	38, 53
Tsp45I	GTSAC	2 cut(s)	38, 53
TspDTI	ATGAA	5 cut(s)	109, 198, 300, 315, 349
XapI	RAATTY	2 cut(s)	234, 452
XceI	RCATGY	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	417, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.