Rmu_sc0022212.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022212.1
OG0001755
Physical Location & Seq
Forward (+)
1 .. 746
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022212.1_g000001.1.cds

Sequence Viewer

Length: 746 bp
aacttcatcggaagagtctgagatagattctgaagtagagtacttcgaatccagacaaatgaatgttttgaaaatcaaaaaatgggaagaaagcaagacaaaatccttcatttcttcttatcaggtgaaccctggtacattcgtttgtgactactgcttttgtcacgaaaagaatggtctccctatgttttgtgaagagtcaaaaaagacttatcacaaagaatgcttcatagctgaagctagaagaaaaaccaagaatggccttgttagccaattggttgaacaagaatatgaagaatatttctctgaacaaaaagagaaagaagaagaaaaagaggtagaaactctgttccaaaaaattatggaaccttctcctccatcttcctcaaaaaaaaaggaagaaatcatctgtggagaaaacatcgatgaagatattgaactggttgaaaaaccagcaaatgtagaactggtgaaaccaccagaaaatgttcatctcttagaacgacaggaggttactaacacatgggatctacttggccaaccatctggcaagtttgattataaagtcaaatatgaccctccgtcatggttcaaagatccagagatcaataagataattcctacagactgggatgatacatcgcccactcaggaaaatgttccagcagaatgtaaaccgttcattccaaaggaacaagctcaagaaaatgagcttcatcagtcaaaagtcgtctctactagcagat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

248

Amino Acids

28.97

Weight (kDa)

4.76

Isoelectric Point (pI)

64.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 562
AclWI GGATC 2 cut(s) 535, 591
AcoI YGGCCR 1 cut(s) 536
AcuI CTGAAG 2 cut(s) 52, 256
AfaI GTAC 2 cut(s) 42, 137
AgsI TTSAA 5 cut(s) 71, 282, 438, 447, 593
AhdI GACNNNNNGTC 1 cut(s) 581
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 4 cut(s) 234, 240, 699, 713
AluI AGCT 4 cut(s) 234, 240, 699, 713
Alw26I GTCTC 2 cut(s) 183, 737
AlwI GGATC 2 cut(s) 535, 591
AoxI GGCC 2 cut(s) 260, 536
Asp700I GAANNNNTTC 2 cut(s) 487, 658
AsuHPI GGTGA 2 cut(s) 137, 482
AsuII TTCGAA 1 cut(s) 46
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BalI TGGCCA 1 cut(s) 538
BccI CCATC 2 cut(s) 386, 551
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 183, 737
BfaI CTAG 2 cut(s) 241, 739
BfmI CTRYAG 1 cut(s) 622
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 133
BmeRI GACNNNNNGTC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 638
BmuI ACTGGG 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 685
Bsa29I ATCGAT 1 cut(s) 424
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 445, 472, 633
BseBI CCWGG 1 cut(s) 133
BseCI ATCGAT 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 638
BseMII CTCAG 2 cut(s) 10, 663
BseNI ACTGG 3 cut(s) 445, 472, 633
BseRI GAGGAG 1 cut(s) 364
BshFI GGCC 2 cut(s) 262, 538
BshVI ATCGAT 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 183, 737
BsmBI CGTCTC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 2 cut(s) 262, 538
Bso31I GGTCTC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 46
Bsp143I GATC 3 cut(s) 527, 596, 604
BspANI GGCC 2 cut(s) 262, 538
BspCNI CTCAG 2 cut(s) 11, 662
BspDI ATCGAT 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 535, 591
BspT104I TTCGAA 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 183
BsrI ACTGG 3 cut(s) 445, 472, 633
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 3 cut(s) 527, 596, 604
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 2 cut(s) 7, 190
BstBI TTCGAA 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 19, 497, 649
BstF5I GGATG 1 cut(s) 638
BstKTI GATC 3 cut(s) 530, 599, 607
BstMAI GTCTC 2 cut(s) 183, 737
BstMBI GATC 3 cut(s) 527, 596, 604
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 622
BstX2I RGATCY 2 cut(s) 527, 596
BstXI CCANNNNNNTGG 1 cut(s) 546
BstYI RGATCY 2 cut(s) 527, 596
Bsu15I ATCGAT 1 cut(s) 424
BsuRI GGCC 2 cut(s) 262, 538
BsuTUI ATCGAT 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 625
BtsCI GGATG 1 cut(s) 638
ClaI ATCGAT 1 cut(s) 424
Csp6I GTAC 2 cut(s) 41, 136
CviAII CATG 2 cut(s) 523, 586
CviJI RGCY 7 cut(s) 234, 240, 262, 271, 538, 699, 713
CviKI_1 RGCY 7 cut(s) 234, 240, 262, 271, 538, 699, 713
CviQI GTAC 2 cut(s) 41, 136
DdeI CTNAG 3 cut(s) 19, 497, 649
DpnI GATC 3 cut(s) 529, 598, 606
DpnII GATC 3 cut(s) 527, 596, 604
DriI GACNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 536
Eam1104I CTCTTC 2 cut(s) 7, 190
Eam1105I GACNNNNNGTC 1 cut(s) 581
EarI CTCTTC 2 cut(s) 7, 190
Eco31I GGTCTC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 52, 256
EcoRII CCWGG 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 2 cut(s) 526, 589
FaiI YATR 8 cut(s) 186, 231, 292, 363, 524, 562, 574, 587
FatI CATG 2 cut(s) 522, 585
FokI GGATG 1 cut(s) 645
FspBI CTAG 2 cut(s) 241, 739
HaeIII GGCC 2 cut(s) 262, 538
Hin1II CATG 2 cut(s) 526, 589
HinfI GANTC 4 cut(s) 15, 27, 48, 198
HphI GGTGA 2 cut(s) 137, 482
Hpy166II GTNNAC 2 cut(s) 128, 675
Hpy188I TCNGA 4 cut(s) 11, 20, 32, 308
Hpy188III TCNNGA 5 cut(s) 52, 165, 600, 651, 702
Hpy8I GTNNAC 2 cut(s) 128, 675
HpyAV CCTTC 2 cut(s) 116, 379
HpyCH4III ACNGT 1 cut(s) 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 3 cut(s) 19, 497, 649
Hsp92II CATG 2 cut(s) 526, 589
Kzo9I GATC 3 cut(s) 527, 596, 604
MaeI CTAG 2 cut(s) 241, 739
MaeIII GTNAC 3 cut(s) 147, 162, 512
MalI GATC 3 cut(s) 529, 598, 606
MboI GATC 3 cut(s) 527, 596, 604
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 2 cut(s) 527, 596
MlsI TGGCCA 1 cut(s) 538
MluCI AATT 3 cut(s) 273, 358, 616
MluNI TGGCCA 1 cut(s) 538
MlyI GAGTC 2 cut(s) 24, 207
MnlI CCTC 5 cut(s) 329, 385, 395, 503, 589
Mox20I TGGCCA 1 cut(s) 538
MroXI GAANNNNTTC 2 cut(s) 487, 658
MscI TGGCCA 1 cut(s) 538
Msp20I TGGCCA 1 cut(s) 538
MspR9I CCNGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 268
NdeII GATC 3 cut(s) 527, 596, 604
NlaIII CATG 2 cut(s) 526, 589
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 147, 162
NspV TTCGAA 1 cut(s) 46
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 2 cut(s) 487, 658
PfeI GAWTC 2 cut(s) 27, 48
PleI GAGTC 2 cut(s) 23, 206
PpsI GAGTC 2 cut(s) 23, 206
PsiI TTATAA 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 367
PsuI RGATCY 2 cut(s) 527, 596
RsaI GTAC 2 cut(s) 42, 137
RsaNI GTAC 2 cut(s) 41, 136
Sau3AI GATC 3 cut(s) 527, 596, 604
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 2 cut(s) 24, 207
ScrFI CCNGG 1 cut(s) 133
SetI ASST 8 cut(s) 127, 236, 242, 340, 371, 514, 701, 715
SfcI CTRYAG 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 3 cut(s) 273, 358, 616
SspI AATATT 1 cut(s) 300
SspMI CTAG 2 cut(s) 241, 739
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 679
TaqI TCGA 2 cut(s) 46, 424
TasI AATT 3 cut(s) 273, 358, 616
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 2 cut(s) 27, 48
TseFI GTSAC 2 cut(s) 147, 162
Tsp45I GTSAC 2 cut(s) 147, 162
TspDTI ATGAA 8 cut(s) 75, 98, 218, 307, 442, 480, 671, 705
TspGWI ACGGA 1 cut(s) 571
XmnI GAANNNNTTC 2 cut(s) 487, 658
XspI CTAG 2 cut(s) 241, 739
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.