Enzymatic polyprotein-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1298 |
| AciI | CCGC | 1 cut(s) | 1265 |
| AclWI | GGATC | 2 cut(s) | 427, 619 |
| AcsI | RAATTY | 5 cut(s) | 371, 812, 1025, 1487, 1500 |
| AcuI | CTGAAG | 4 cut(s) | 72, 621, 667, 903 |
| AfaI | GTAC | 1 cut(s) | 1004 |
| AflIII | ACRYGT | 1 cut(s) | 1258 |
| AhlI | ACTAGT | 2 cut(s) | 335, 890 |
| AjnI | CCWGG | 1 cut(s) | 745 |
| AluBI | AGCT | 7 cut(s) | 50, 296, 310, 908, 952, 1217, 1354 |
| AluI | AGCT | 7 cut(s) | 50, 296, 310, 908, 952, 1217, 1354 |
| Alw26I | GTCTC | 1 cut(s) | 334 |
| AlwI | GGATC | 2 cut(s) | 427, 619 |
| Ama87I | CYCGRG | 1 cut(s) | 1108 |
| AoxI | GGCC | 3 cut(s) | 73, 604, 708 |
| ApoI | RAATTY | 5 cut(s) | 371, 812, 1025, 1487, 1500 |
| AseI | ATTAAT | 1 cut(s) | 1064 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 255 |
| AspA2I | CCTAGG | 1 cut(s) | 1378 |
| AspS9I | GGNCC | 2 cut(s) | 708, 743 |
| AsuHPI | GGTGA | 4 cut(s) | 514, 547, 800, 1394 |
| AvaI | CYCGRG | 1 cut(s) | 1108 |
| AvaII | GGWCC | 1 cut(s) | 743 |
| AvrII | CCTAGG | 1 cut(s) | 1378 |
| BauI | CACGAG | 1 cut(s) | 1340 |
| BbsI | GAAGAC | 1 cut(s) | 1294 |
| BccI | CCATC | 5 cut(s) | 178, 503, 525, 1234, 1361 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1089, 1123 |
| BciT130I | CCWGG | 1 cut(s) | 747 |
| BclI | TGATCA | 1 cut(s) | 379 |
| BcoDI | GTCTC | 1 cut(s) | 334 |
| BcuI | ACTAGT | 2 cut(s) | 335, 890 |
| BfaI | CTAG | 6 cut(s) | 336, 891, 909, 1080, 1379, 1520 |
| BfmI | CTRYAG | 1 cut(s) | 352 |
| BglII | AGATCT | 2 cut(s) | 1045, 1479 |
| BlnI | CCTAGG | 1 cut(s) | 1378 |
| Bme1390I | CCNGG | 1 cut(s) | 747 |
| Bme18I | GGWCC | 1 cut(s) | 743 |
| BmeT110I | CYCGRG | 1 cut(s) | 1108 |
| BmgT120I | GGNCC | 2 cut(s) | 708, 743 |
| BmiI | GGNNCC | 1 cut(s) | 168 |
| BmrFI | CCNGG | 1 cut(s) | 747 |
| BmsI | GCATC | 4 cut(s) | 1119, 1141, 1498, 1723 |
| BpiI | GAAGAC | 1 cut(s) | 1294 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1132, 1164 |
| BpmI | CTGGAG | 1 cut(s) | 1080 |
| BpuEI | CTTGAG | 3 cut(s) | 282, 917, 1493 |
| Bsa29I | ATCGAT | 2 cut(s) | 201, 216 |
| BsaJI | CCNNGG | 3 cut(s) | 607, 1378, 1531 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 684, 714 |
| Bse1I | ACTGG | 3 cut(s) | 240, 499, 1754 |
| Bse3DI | GCAATG | 1 cut(s) | 1593 |
| BseBI | CCWGG | 1 cut(s) | 747 |
| BseCI | ATCGAT | 2 cut(s) | 201, 216 |
| BseDI | CCNNGG | 3 cut(s) | 607, 1378, 1531 |
| BseGI | GGATG | 5 cut(s) | 579, 904, 915, 1132, 1372 |
| BseMI | GCAATG | 1 cut(s) | 1593 |
| BseMII | CTCAG | 4 cut(s) | 111, 1013, 1128, 1587 |
| BseNI | ACTGG | 3 cut(s) | 240, 499, 1754 |
| BseRI | GAGGAG | 1 cut(s) | 1677 |
| Bsh1285I | CGRYCG | 1 cut(s) | 715 |
| BshFI | GGCC | 3 cut(s) | 75, 606, 710 |
| BshVI | ATCGAT | 2 cut(s) | 201, 216 |
| BsiEI | CGRYCG | 1 cut(s) | 715 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1108 |
| BsmAI | GTCTC | 1 cut(s) | 334 |
| BsmBI | CGTCTC | 1 cut(s) | 334 |
| BsmI | GAATGC | 3 cut(s) | 44, 976, 1100 |
| BsnI | GGCC | 3 cut(s) | 75, 606, 710 |
| BsoBI | CYCGRG | 1 cut(s) | 1108 |
| Bsp143I | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| BspACI | CCGC | 1 cut(s) | 1265 |
| BspANI | GGCC | 3 cut(s) | 75, 606, 710 |
| BspCNI | CTCAG | 4 cut(s) | 112, 1012, 1129, 1586 |
| BspDI | ATCGAT | 2 cut(s) | 201, 216 |
| BspLI | GGNNCC | 1 cut(s) | 168 |
| BspPI | GGATC | 2 cut(s) | 427, 619 |
| BsrDI | GCAATG | 1 cut(s) | 1593 |
| BsrI | ACTGG | 3 cut(s) | 240, 499, 1754 |
| BssECI | CCNNGG | 3 cut(s) | 607, 1378, 1531 |
| BssMI | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| BssSI | CACGAG | 1 cut(s) | 1340 |
| BssT1I | CCWWGG | 3 cut(s) | 607, 1378, 1531 |
| Bst2BI | CACGAG | 1 cut(s) | 1340 |
| Bst2UI | CCWGG | 1 cut(s) | 747 |
| Bst4CI | ACNGT | 2 cut(s) | 433, 490 |
| Bst6I | CTCTTC | 1 cut(s) | 6 |
| BstC8I | GCNNGC | 1 cut(s) | 1215 |
| BstDEI | CTNAG | 6 cut(s) | 120, 999, 1137, 1512, 1573, 1599 |
| BstF5I | GGATG | 5 cut(s) | 579, 904, 915, 1132, 1372 |
| BstKTI | GATC | 7 cut(s) | 382, 422, 614, 773, 793, 1048, 1482 |
| BstMAI | GTCTC | 1 cut(s) | 334 |
| BstMBI | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| BstMCI | CGRYCG | 1 cut(s) | 715 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 81, 1195 |
| BstNI | CCWGG | 1 cut(s) | 747 |
| BstNSI | RCATGY | 2 cut(s) | 404, 1262 |
| BstSCI | CCNGG | 1 cut(s) | 745 |
| BstSFI | CTRYAG | 1 cut(s) | 352 |
| BstV2I | GAAGAC | 1 cut(s) | 1294 |
| BstX2I | RGATCY | 2 cut(s) | 1045, 1479 |
| BstYI | RGATCY | 2 cut(s) | 1045, 1479 |
| Bsu15I | ATCGAT | 2 cut(s) | 201, 216 |
| BsuRI | GGCC | 3 cut(s) | 75, 606, 710 |
| BsuTUI | ATCGAT | 2 cut(s) | 201, 216 |
| BtsCI | GGATG | 5 cut(s) | 579, 904, 915, 1132, 1372 |
| BtsI | GCAGTG | 1 cut(s) | 1152 |
| BtsIMutI | CAGTG | 1 cut(s) | 1152 |
| Cac8I | GCNNGC | 1 cut(s) | 1215 |
| Cfr13I | GGNCC | 2 cut(s) | 708, 743 |
| ClaI | ATCGAT | 2 cut(s) | 201, 216 |
| Csp6I | GTAC | 1 cut(s) | 1003 |
| CviQI | GTAC | 1 cut(s) | 1003 |
| DdeI | CTNAG | 6 cut(s) | 120, 999, 1137, 1512, 1573, 1599 |
| DpnI | GATC | 7 cut(s) | 381, 421, 613, 772, 792, 1047, 1481 |
| DpnII | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1298 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1298 |
| Eam1104I | CTCTTC | 1 cut(s) | 6 |
| EarI | CTCTTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 3 cut(s) | 607, 1378, 1531 |
| Eco47I | GGWCC | 1 cut(s) | 743 |
| Eco57I | CTGAAG | 4 cut(s) | 72, 621, 667, 903 |
| Eco88I | CYCGRG | 1 cut(s) | 1108 |
| EcoO109I | RGGNCCY | 1 cut(s) | 743 |
| EcoRI | GAATTC | 2 cut(s) | 1025, 1500 |
| EcoRII | CCWGG | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 3 cut(s) | 607, 1378, 1531 |
| EcoT22I | ATGCAT | 1 cut(s) | 1134 |
| ErhI | CCWWGG | 3 cut(s) | 607, 1378, 1531 |
| Esp3I | CGTCTC | 1 cut(s) | 334 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 837, 869 |
| FbaI | TGATCA | 1 cut(s) | 379 |
| FokI | GGATG | 5 cut(s) | 566, 902, 911, 1119, 1379 |
| FspBI | CTAG | 6 cut(s) | 336, 891, 909, 1080, 1379, 1520 |
| GsuI | CTGGAG | 1 cut(s) | 1080 |
| HaeIII | GGCC | 3 cut(s) | 75, 606, 710 |
| HincII | GTYRAC | 1 cut(s) | 1581 |
| HindII | GTYRAC | 1 cut(s) | 1581 |
| HindIII | AAGCTT | 1 cut(s) | 950 |
| HinfI | GANTC | 3 cut(s) | 14, 863, 1516 |
| HpaI | GTTAAC | 1 cut(s) | 1581 |
| HphI | GGTGA | 4 cut(s) | 514, 547, 800, 1394 |
| Hpy166II | GTNNAC | 2 cut(s) | 1145, 1581 |
| Hpy188I | TCNGA | 9 cut(s) | 121, 601, 616, 663, 686, 768, 883, 945, 1031 |
| Hpy8I | GTNNAC | 2 cut(s) | 1145, 1581 |
| Hpy99I | CGWCG | 1 cut(s) | 1280 |
| HpyAV | CCTTC | 4 cut(s) | 316, 596, 1083, 1230 |
| HpyCH4III | ACNGT | 2 cut(s) | 433, 490 |
| HpyCH4IV | ACGT | 1 cut(s) | 1275 |
| HpyCH4V | TGCA | 5 cut(s) | 437, 449, 1132, 1157, 1674 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 81, 1195 |
| HpyF3I | CTNAG | 6 cut(s) | 120, 999, 1137, 1512, 1573, 1599 |
| HpySE526I | ACGT | 1 cut(s) | 1275 |
| Ksp22I | TGATCA | 1 cut(s) | 379 |
| KspAI | GTTAAC | 1 cut(s) | 1581 |
| Kzo9I | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| LmnI | GCTCC | 2 cut(s) | 1099, 1222 |
| LweI | GCATC | 4 cut(s) | 1119, 1141, 1498, 1723 |
| MaeI | CTAG | 6 cut(s) | 336, 891, 909, 1080, 1379, 1520 |
| MaeII | ACGT | 1 cut(s) | 1275 |
| MaeIII | GTNAC | 2 cut(s) | 490, 499 |
| MalI | GATC | 7 cut(s) | 381, 421, 613, 772, 792, 1047, 1481 |
| MboI | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| MfeI | CAATTG | 1 cut(s) | 86 |
| MflI | RGATCY | 2 cut(s) | 1045, 1479 |
| MlyI | GAGTC | 2 cut(s) | 23, 1525 |
| MmeI | TCCRAC | 1 cut(s) | 670 |
| Mph1103I | ATGCAT | 1 cut(s) | 1134 |
| MroXI | GAANNNNTTC | 1 cut(s) | 255 |
| MseI | TTAA | 2 cut(s) | 1064, 1580 |
| MslI | CAYNNNNRTG | 1 cut(s) | 399 |
| MspR9I | CCNGG | 1 cut(s) | 747 |
| MunI | CAATTG | 1 cut(s) | 86 |
| Mva1269I | GAATGC | 3 cut(s) | 44, 976, 1100 |
| MvaI | CCWGG | 1 cut(s) | 747 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 81, 1195 |
| NdeII | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| NlaIV | GGNNCC | 1 cut(s) | 168 |
| NsiI | ATGCAT | 1 cut(s) | 1134 |
| NspI | RCATGY | 2 cut(s) | 404, 1262 |
| PciI | ACATGT | 1 cut(s) | 1258 |
| PctI | GAATGC | 3 cut(s) | 44, 976, 1100 |
| PdmI | GAANNNNTTC | 1 cut(s) | 255 |
| PfeI | GAWTC | 1 cut(s) | 863 |
| PleI | GAGTC | 2 cut(s) | 22, 1524 |
| PpsI | GAGTC | 2 cut(s) | 22, 1524 |
| PpuMI | RGGWCCY | 1 cut(s) | 743 |
| PscI | ACATGT | 1 cut(s) | 1258 |
| PshBI | ATTAAT | 1 cut(s) | 1064 |
| Psp5II | RGGWCCY | 1 cut(s) | 743 |
| Psp6I | CCWGG | 1 cut(s) | 745 |
| PspGI | CCWGG | 1 cut(s) | 745 |
| PspN4I | GGNNCC | 1 cut(s) | 168 |
| PspPI | GGNCC | 2 cut(s) | 708, 743 |
| PspPPI | RGGWCCY | 1 cut(s) | 743 |
| PsuI | RGATCY | 2 cut(s) | 1045, 1479 |
| RsaI | GTAC | 1 cut(s) | 1004 |
| RsaNI | GTAC | 1 cut(s) | 1003 |
| RseI | CAYNNNNRTG | 1 cut(s) | 399 |
| SaqAI | TTAA | 2 cut(s) | 1064, 1580 |
| Sau3AI | GATC | 7 cut(s) | 379, 419, 611, 770, 790, 1045, 1479 |
| Sau96I | GGNCC | 2 cut(s) | 708, 743 |
| SchI | GAGTC | 2 cut(s) | 23, 1525 |
| ScrFI | CCNGG | 1 cut(s) | 747 |
| SfaNI | GCATC | 4 cut(s) | 1119, 1141, 1498, 1723 |
| SfcI | CTRYAG | 1 cut(s) | 352 |
| SinI | GGWCC | 1 cut(s) | 743 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 399 |
| SmlI | CTYRAG | 3 cut(s) | 297, 932, 1472 |
| SmoI | CTYRAG | 3 cut(s) | 297, 932, 1472 |
| SpeI | ACTAGT | 2 cut(s) | 335, 890 |
| SsiI | CCGC | 1 cut(s) | 1265 |
| SspI | AATATT | 1 cut(s) | 113 |
| SspMI | CTAG | 6 cut(s) | 336, 891, 909, 1080, 1379, 1520 |
| StyD4I | CCNGG | 1 cut(s) | 745 |
| StyI | CCWWGG | 3 cut(s) | 607, 1378, 1531 |
| TaaI | ACNGT | 2 cut(s) | 433, 490 |
| TaiI | ACGT | 1 cut(s) | 1278 |
| TaqI | TCGA | 4 cut(s) | 201, 216, 320, 816 |
| TaqII | GACCGA | 1 cut(s) | 729 |
| TatI | WGTACW | 1 cut(s) | 1002 |
| TfiI | GAWTC | 1 cut(s) | 863 |
| Tru1I | TTAA | 2 cut(s) | 1064, 1580 |
| Tru9I | TTAA | 2 cut(s) | 1064, 1580 |
| TscAI | CASTG | 1 cut(s) | 1159 |
| TspRI | CASTG | 1 cut(s) | 1159 |
| VpaK11BI | GGWCC | 1 cut(s) | 743 |
| VspI | ATTAAT | 1 cut(s) | 1064 |
| XapI | RAATTY | 5 cut(s) | 371, 812, 1025, 1487, 1500 |
| XbaI | TCTAGA | 1 cut(s) | 1519 |
| XceI | RCATGY | 2 cut(s) | 404, 1262 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 462 |
| XmaJI | CCTAGG | 1 cut(s) | 1378 |
| XmnI | GAANNNNTTC | 1 cut(s) | 255 |
| XspI | CTAG | 6 cut(s) | 336, 891, 909, 1080, 1379, 1520 |
| Zsp2I | ATGCAT | 1 cut(s) | 1134 |