Rmu_sc0004908.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004908.1
Physical Location & Seq
Reverse (-)
75564 .. 75974
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004908.1_g000009.1.cds

Sequence Viewer

Length: 411 bp
atgaaaggctacgaaatagcctattttgatactgaagaagacgacaggtcagtctattctgcctggtctgaagaagaaacttcatctgagtctgagatagattctgaagtagagtacttcgaatccagacaaatgaatgtcttaagaatcaagaattgggaagaaagcaagacaaaagctttaatgtcttcttatcaggtgaaccctggtacattcgtttgtgactactgcctttgtcacgaaaagaatggtctccctatgttttgtgaagagtctaagaagacttatcacaaagaatgcttcatagctgaagcaagaagaaaaaccaagaatggtcttgtcagccaattggttgaacaagaatatgaagaatatttctcggaacaaaaagagaaagaagaagaaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

16.21

Weight (kDa)

4.62

Isoelectric Point (pI)

76.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AcuI CTGAAG 4 cut(s) 54, 90, 126, 330
AfaI GTAC 2 cut(s) 116, 211
AflII CTTAAG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 356
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 62, 205
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AluBI AGCT 2 cut(s) 179, 308
AluI AGCT 2 cut(s) 179, 308
Alw26I GTCTC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 211
AsuII TTCGAA 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BbsI GAAGAC 3 cut(s) 45, 180, 287
BciT130I CCWGG 2 cut(s) 64, 207
BcoDI GTCTC 1 cut(s) 257
BfrI CTTAAG 1 cut(s) 142
BmcAI AGTACT 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 64, 207
BmeRI GACNNNNNGTC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 64, 207
BpiI GAAGAC 3 cut(s) 45, 180, 287
Bpu14I TTCGAA 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 205
BseBI CCWGG 2 cut(s) 64, 207
BseDI CCNNGG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 78, 84
BsmAI GTCTC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 79, 85
BspT104I TTCGAA 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 205
Bst2UI CCWGG 2 cut(s) 64, 207
Bst6I CTCTTC 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 142
BstBI TTCGAA 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 87, 93, 276
BstMAI GTCTC 1 cut(s) 257
BstNI CCWGG 2 cut(s) 64, 207
BstSCI CCNGG 2 cut(s) 62, 205
BstV2I GAAGAC 3 cut(s) 45, 180, 287
Csp6I GTAC 2 cut(s) 115, 210
CviJI RGCY 5 cut(s) 9, 20, 179, 308, 345
CviKI_1 RGCY 5 cut(s) 9, 20, 179, 308, 345
CviQI GTAC 2 cut(s) 115, 210
DdeI CTNAG 3 cut(s) 87, 93, 276
DrdI GACNNNNNNGTC 1 cut(s) 50
DriI GACNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 264
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 257
Eco57I CTGAAG 4 cut(s) 54, 90, 126, 330
EcoRII CCWGG 2 cut(s) 62, 205
FaiI YATR 3 cut(s) 260, 305, 366
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 5 cut(s) 89, 101, 122, 147, 272
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 5 cut(s) 70, 88, 94, 106, 382
Hpy188III TCNNGA 3 cut(s) 126, 151, 239
Hpy8I GTNNAC 1 cut(s) 202
HpyF3I CTNAG 3 cut(s) 87, 93, 276
LpnPI CCDG 7 cut(s) 31, 49, 76, 139, 182, 192, 219
MaeIII GTNAC 2 cut(s) 221, 236
MfeI CAATTG 1 cut(s) 347
MluCI AATT 2 cut(s) 154, 347
MlyI GAGTC 2 cut(s) 98, 281
MseI TTAA 2 cut(s) 143, 182
MspCI CTTAAG 1 cut(s) 142
MspR9I CCNGG 2 cut(s) 64, 207
MunI CAATTG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 2 cut(s) 64, 207
NmuCI GTSAC 2 cut(s) 221, 236
NspV TTCGAA 1 cut(s) 120
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 3 cut(s) 101, 122, 147
PleI GAGTC 2 cut(s) 97, 280
PpsI GAGTC 2 cut(s) 97, 280
Psp6I CCWGG 2 cut(s) 62, 205
PspGI CCWGG 2 cut(s) 62, 205
RsaI GTAC 2 cut(s) 116, 211
RsaNI GTAC 2 cut(s) 115, 210
SaqAI TTAA 2 cut(s) 143, 182
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 2 cut(s) 98, 281
ScrFI CCNGG 2 cut(s) 64, 207
SetI ASST 4 cut(s) 50, 181, 201, 310
SfuI TTCGAA 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 2 cut(s) 154, 347
SspI AATATT 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 62, 205
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 154, 347
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 3 cut(s) 101, 122, 147
Tru1I TTAA 2 cut(s) 143, 182
Tru9I TTAA 2 cut(s) 143, 182
TseFI GTSAC 2 cut(s) 221, 236
Tsp45I GTSAC 2 cut(s) 221, 236
TspDTI ATGAA 5 cut(s) 17, 72, 149, 292, 381
Vha464I CTTAAG 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.