Rh6DG255600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001755
Physical Location & Seq
Reverse (-)
44616334 .. 44618596
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG255600.1

Sequence Viewer

Length: 372 bp
ATGGTGGATGTTCCAGAGTTCAAGGCCTCCGTTTCAGAGACGAATTGGAGCAACTCCGAAAGAAGTCTGGTGTTATTTGGATTGGATTGTGTTTGCTCAAGGCCATTGATAAAGCACTTCTCTTCCCTTGTCAAGTGGACGAGGGCGGCATCTGCCAAGGCACCCCAATCAGATGGGAATGTTGTTCAGTTTGAGAGTGGGTACTTAGTCGAGACTGTTGTGGAAGGAACTGACATTGGAGTTGTTCCTTTCAAGATCCGCATTTCAGAGGATGGCGAGCTCTTTGCTGTAGATTCTAACTTCAAATATTATCATTCAAAGCCACTAAGATTAGGCTTTTACGTAGCCTATGTATTCACATTCAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

6.09

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AciI CCGC 2 cut(s) 146, 259
AclWI GGATC 1 cut(s) 250
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 5 cut(s) 22, 253, 304, 318, 364
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 32, 206
AlwI GGATC 1 cut(s) 250
AoxI GGCC 2 cut(s) 24, 101
BanI GGYRCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 282
BccI CCATC 2 cut(s) 167, 266
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcoDI GTCTC 2 cut(s) 32, 206
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 13, 277
BshFI GGCC 2 cut(s) 26, 103
BshNI GGYRCC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 32, 206
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 26, 103
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 2 cut(s) 146, 259
BspANI GGCC 2 cut(s) 26, 103
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 2 cut(s) 205, 326
BstF5I GGATG 2 cut(s) 13, 277
BstKTI GATC 1 cut(s) 258
BstMAI GTCTC 2 cut(s) 32, 206
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 288
BstSNI TACGTA 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 2 cut(s) 26, 103
BtsCI GGATG 2 cut(s) 13, 277
Cac8I GCNNGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 6 cut(s) 26, 103, 280, 322, 336, 347
CviKI_1 RGCY 6 cut(s) 26, 103, 280, 322, 336, 347
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 205, 326
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 280
Eco105I TACGTA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 32
FaiI YATR 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 2 cut(s) 20, 284
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 2 cut(s) 26, 103
HinfI GANTC 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 4 cut(s) 37, 58, 172, 268
Hpy188III TCNNGA 3 cut(s) 14, 211, 253
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 205, 326
HpySE526I ACGT 1 cut(s) 342
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 27, 53
LweI GCATC 1 cut(s) 158
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 114
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 43
MnlI CCTC 3 cut(s) 37, 135, 262
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 255
NlaIV GGNNCC 1 cut(s) 162
PceI AGGCCT 1 cut(s) 26
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 282
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 255
SduI GDGCHC 1 cut(s) 282
SetI ASST 2 cut(s) 282, 345
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SnaBI TACGTA 1 cut(s) 343
Sse9I AATT 1 cut(s) 43
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 2 cut(s) 146, 259
SspI AATATT 1 cut(s) 308
SstI GAGCTC 1 cut(s) 282
StuI AGGCCT 1 cut(s) 26
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 210
TasI AATT 1 cut(s) 43
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.