Rmu_sc0006196.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006196.1
OG0001755
Physical Location & Seq
Forward (+)
6956 .. 7720
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006196.1_g000002.1.cds

Sequence Viewer

Length: 765 bp
atgaaaggctacgaaatagcctattctgatgatgaagaagacgacaagttagtttactctgcctggtttgaagaagaagatttatcggaatctaagtcagattctgaagtagagtacttcgaatcaagacagatgaatgttctaagaatcaaaaactgggaagaaagtaagacagaatctttaatgtcttcttatcaggtgaaccctggtacattcgtttgtgactactgcctatgtcatgaaaaggatggtctccctatgttttgtgaggagtcaaaaaagacttatcacaaagaatgcttcatagctgaagcaagaaggaaaaccaagaatggccttgtcagccaattggtagaacaagaatatgaaaaatatttctctgaagccttgttccaagaaattatggaaccatcttcctcaaaaataaaggaagaaatcatcggtgaagaaaaaatcgatgaagatatcaaactggttgaaccaccagaaattgttccagaagaatgtaaaccattcattccaaaggaacaagctcaacaaaatgagcttcaaccatcgaaggtcatctctactagtagatacagcaactacacagagattggactgaaattccctgatcacaaaaaatatcatctacatgcctttgtagataatggatcaggatttacggttgcaaaaagatttgcaattctagaagaactttggaaagaagataaaaaagaactgctattggtgtcacatttgatggaagtcatctcaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

29.74

Weight (kDa)

4.73

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 664
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 3 cut(s) 126, 330, 402
AfaI GTAC 2 cut(s) 116, 211
AgsI TTSAA 3 cut(s) 71, 479, 551
AhlI ACTAGT 1 cut(s) 572
AjnI CCWGG 2 cut(s) 62, 205
AluBI AGCT 3 cut(s) 308, 533, 547
AluI AGCT 3 cut(s) 308, 533, 547
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 664
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 492
AsuHPI GGTGA 3 cut(s) 211, 455, 750
AsuII TTCGAA 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BbsI GAAGAC 2 cut(s) 45, 180
BccI CCATC 4 cut(s) 242, 418, 562, 739
BciT130I CCWGG 2 cut(s) 64, 207
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 2 cut(s) 573, 692
BmcAI AGTACT 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 64, 207
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 2 cut(s) 64, 207
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 45, 180
Bpu14I TTCGAA 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 161, 477
BseBI CCWGG 2 cut(s) 64, 207
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 161, 477
BseRI GAGGAG 1 cut(s) 284
BshFI GGCC 1 cut(s) 336
BshVI ATCGAT 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 336
Bso31I GGTCTC 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 2 cut(s) 616, 656
BspANI GGCC 1 cut(s) 336
BspDI ATCGAT 1 cut(s) 456
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 1 cut(s) 664
BspT104I TTCGAA 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 2 cut(s) 161, 477
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 616, 656
Bst2UI CCWGG 2 cut(s) 64, 207
Bst4CI ACNGT 1 cut(s) 670
BstBI TTCGAA 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 93, 143
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 619, 659
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 616, 656
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 2 cut(s) 64, 207
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 62, 205
BstV2I GAAGAC 2 cut(s) 45, 180
Bsu15I ATCGAT 1 cut(s) 456
BsuRI GGCC 1 cut(s) 336
BsuTUI ATCGAT 1 cut(s) 456
BtsCI GGATG 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 238
ClaI ATCGAT 1 cut(s) 456
Csp6I GTAC 2 cut(s) 115, 210
CviAII CATG 3 cut(s) 239, 638, 762
CviJI RGCY 8 cut(s) 9, 20, 308, 336, 345, 386, 533, 547
CviKI_1 RGCY 8 cut(s) 9, 20, 308, 336, 345, 386, 533, 547
CviQI GTAC 2 cut(s) 115, 210
DdeI CTNAG 2 cut(s) 93, 143
DpnI GATC 2 cut(s) 618, 658
DpnII GATC 2 cut(s) 616, 656
Eco31I GGTCTC 1 cut(s) 257
Eco32I GATATC 1 cut(s) 466
Eco57I CTGAAG 3 cut(s) 126, 330, 402
EcoRII CCWGG 2 cut(s) 62, 205
EcoRV GATATC 1 cut(s) 466
FaeI CATG 3 cut(s) 242, 641, 765
FaiI YATR 8 cut(s) 235, 240, 260, 305, 366, 404, 639, 763
FatI CATG 3 cut(s) 238, 637, 761
FbaI TGATCA 1 cut(s) 616
FokI GGATG 1 cut(s) 260
FspBI CTAG 2 cut(s) 573, 692
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 3 cut(s) 242, 641, 765
HinfI GANTC 6 cut(s) 89, 101, 122, 147, 176, 272
HphI GGTGA 3 cut(s) 211, 455, 750
Hpy166II GTNNAC 3 cut(s) 55, 202, 509
Hpy188I TCNGA 5 cut(s) 28, 88, 100, 106, 382
Hpy188III TCNNGA 5 cut(s) 126, 239, 497, 660, 692
Hpy8I GTNNAC 3 cut(s) 55, 202, 509
HpyAV CCTTC 2 cut(s) 312, 553
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4V TGCA 2 cut(s) 674, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 2 cut(s) 93, 143
Hsp92II CATG 3 cut(s) 242, 641, 765
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 2 cut(s) 616, 656
MaeI CTAG 2 cut(s) 573, 692
MaeIII GTNAC 2 cut(s) 221, 735
MalI GATC 2 cut(s) 618, 658
MboI GATC 2 cut(s) 616, 656
MfeI CAATTG 1 cut(s) 347
MluCI AATT 5 cut(s) 347, 399, 489, 608, 687
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 2 cut(s) 262, 427
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 636
MspR9I CCNGG 2 cut(s) 64, 207
MunI CAATTG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 2 cut(s) 64, 207
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 2 cut(s) 616, 656
NlaIII CATG 3 cut(s) 242, 641, 765
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 221, 735
NspI RCATGY 1 cut(s) 641
NspV TTCGAA 1 cut(s) 120
PagI TCATGA 1 cut(s) 238
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 5 cut(s) 89, 101, 122, 147, 176
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 62, 205
PspGI CCWGG 2 cut(s) 62, 205
PspN4I GGNNCC 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 116, 211
RsaNI GTAC 2 cut(s) 115, 210
RseI CAYNNNNRTG 1 cut(s) 636
SaqAI TTAA 1 cut(s) 182
Sau3AI GATC 2 cut(s) 616, 656
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 64, 207
SetI ASST 5 cut(s) 201, 310, 535, 549, 564
SfuI TTCGAA 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 636
SpeI ACTAGT 1 cut(s) 572
Sse9I AATT 5 cut(s) 347, 399, 489, 608, 687
SspI AATATT 1 cut(s) 374
SspMI CTAG 2 cut(s) 573, 692
StyD4I CCNGG 2 cut(s) 62, 205
TaaI ACNGT 1 cut(s) 670
TaqI TCGA 3 cut(s) 120, 456, 557
TasI AATT 5 cut(s) 347, 399, 489, 608, 687
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 5 cut(s) 89, 101, 122, 147, 176
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseFI GTSAC 2 cut(s) 221, 735
Tsp45I GTSAC 2 cut(s) 221, 735
TspDTI ATGAA 8 cut(s) 17, 48, 149, 255, 292, 381, 474, 505
XapI RAATTY 1 cut(s) 608
XbaI TCTAGA 1 cut(s) 691
XceI RCATGY 1 cut(s) 641
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 2 cut(s) 573, 692
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.