Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002691.1

Orthogroup ID

OG0001755

Physical Location & Seq

Genomic Coordinates Reverse (-)

120807 .. 121745

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002691.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgaagatcctaaaaagaaattcttcaagaaaaagaagaattaccgagtcaatcatcagaatactcaaccaagcaagaaagcttgcagatgctagttatgtaaagctgaagggcactatgccaatgaatgcccggaaaaagggtaaaagatctactaaagctctatttgacgaatacgagcctatagtagaaacaacaaatatgaagggctacgaaatagcctattctgatgatgaagaagacgacaggtcaatttactctgcctggtctaaagaagaatcatctgattctgaaatagattctgaagtagagtacttagaatctagacagatgaatgttctacacgtcaaaaactggaaagaaagtaaggcagaagcaataacgtcttcctaccaggtgaaccctggtgcattcgtttgtgactactgcttatgtcatgaaaagaatggacttcctatgttttgtgaaaagtcaaaaaagacttatcacaaagaatgcttcatagctgaagcaagaagaaagaccaaaaacggccttgtcagccaactggttgaacaagaatatgaagaatatttctctgagaaaaaagagaaagaattagaaattcagttccaagaaattatggaaccctcttccttaaaaataaaggaagaaaaaatcaaggaagaaaaaatcaaggaagaaaagctcgatccaactattgaattggttgaaataccagaaagtgttccaaaagaatgtaaaccattcatacctcaggaacaagctcaaaaaaatgagcttcaacaatcaaaagtcatctctactagtagatacaacaactacatagagattggactcaaattccctgatcacaaaaaatatcatctacatgcctttgtggataatggatcaggatttatagttgcaaaaagatttgcaattccagaagaactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

36.48

Weight (kDa)

6.39

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21631 FvH4_2g10222 FvH4_4g24921 FvH4_6g05922 FvH4_6g25072
rosa_chinensis	RchiOBHm_Chr2g0093451
rosa_laevigata	RLG00000022539 RLG00000034490 RLG00000034528
rosa_multiflora	Rmu_sc0000399.1_g000026 Rmu_sc0000770.1_g000030 Rmu_sc0001851.1_g000051 Rmu_sc0002187.1_g000007 Rmu_sc0002285.1_g000023 Rmu_sc0002691.1_g000038 Rmu_sc0002818.1_g000001 Rmu_sc0002845.1_g000027 Rmu_sc0003187.1_g000014 Rmu_sc0003249.1_g000027 Rmu_sc0003467.1_g000008 Rmu_sc0004510.1_g000016 Rmu_sc0004908.1_g000009 Rmu_sc0005069.1_g000025 Rmu_sc0006196.1_g000002 Rmu_sc0006361.1_g000017 Rmu_sc0006416.1_g000013 Rmu_sc0006682.1_g000001 Rmu_sc0010379.1_g000007 Rmu_sc0010686.1_g000001 Rmu_sc0013208.1_g000001 Rmu_sc0022212.1_g000001 Rmu_sc0025570.1_g000001 Rmu_sc0027653.1_g000001 Rmu_sc0029502.1_g000001 Rmu_sc0035757.1_g000001 Rmu_ssc0000052.1_g000013 Rmu_ssc0000053.1_g000013 Rmu_ssc0000388.1_g000053 Rmu_ssc0000397.1_g000010
rosa_rugosa	Rorug05G0492200 Rorug07G0333400
rosa_samantha	Rh5BG353500 Rh6DG255600 Rh7BG334600
rosa_wichuraiana	Rw0G020000 Rw1G017190 Rw3G026880 Rw4G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	686, 898
AcsI	RAATTY	3 cut(s)	19, 603, 842
AcuI	CTGAAG	3 cut(s)	128, 324, 528
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	5 cut(s)	27, 554, 704, 713, 785
AhdI	GACNNNNNGTC	1 cut(s)	247
AhlI	ACTAGT	1 cut(s)	806
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	3 cut(s)	263, 393, 403
AluBI	AGCT	7 cut(s)	82, 106, 161, 506, 688, 767, 781
AluI	AGCT	7 cut(s)	82, 106, 161, 506, 688, 767, 781
AlwI	GGATC	2 cut(s)	686, 898
AoxI	GGCC	1 cut(s)	532
ApoI	RAATTY	3 cut(s)	19, 603, 842
Asp700I	GAANNNNTTC	2 cut(s)	22, 726
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	409
AxyI	CCTNAGG	1 cut(s)	756
BaeGI	GKGCMC	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	246, 378
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	3 cut(s)	265, 395, 405
BclI	TGATCA	1 cut(s)	850
BcnI	CCSGG	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	806
BfaI	CTAG	4 cut(s)	93, 324, 807, 937
BfmI	CTRYAG	1 cut(s)	183
BglII	AGATCT	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	4 cut(s)	133, 265, 395, 405
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	4 cut(s)	133, 265, 395, 405
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	246, 378
BpuMI	CCSGG	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	359, 552
Bse21I	CCTNAGG	1 cut(s)	756
BseBI	CCWGG	3 cut(s)	265, 395, 405
BseDI	CCNNGG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	570, 770
BseNI	ACTGG	2 cut(s)	359, 552
BseSI	GKGCMC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmI	GAATGC	3 cut(s)	133, 410, 500
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	5 cut(s)	6, 149, 691, 850, 890
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	2 cut(s)	571, 769
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	686, 898
BsrI	ACTGG	2 cut(s)	359, 552
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	5 cut(s)	6, 149, 691, 850, 890
Bst2UI	CCWGG	3 cut(s)	265, 395, 405
Bst6I	CTCTTC	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	316, 579, 756
BstKTI	GATC	5 cut(s)	9, 152, 694, 853, 893
BstMBI	GATC	5 cut(s)	6, 149, 691, 850, 890
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstNI	CCWGG	3 cut(s)	265, 395, 405
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	4 cut(s)	131, 263, 393, 403
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	116
BstV2I	GAAGAC	2 cut(s)	246, 378
BstX2I	RGATCY	2 cut(s)	6, 149
BstYI	RGATCY	2 cut(s)	6, 149
Bsu36I	CCTNAGG	1 cut(s)	756
BsuRI	GGCC	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	436
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	2 cut(s)	437, 872
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	316, 579, 756
DpnI	GATC	5 cut(s)	8, 151, 693, 852, 892
DpnII	GATC	5 cut(s)	6, 149, 691, 850, 890
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	637
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	637
Eco57I	CTGAAG	3 cut(s)	128, 324, 528
Eco81I	CCTNAGG	1 cut(s)	756
EcoRII	CCWGG	3 cut(s)	263, 393, 403
FaeI	CATG	2 cut(s)	440, 875
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	2 cut(s)	436, 871
FbaI	TGATCA	1 cut(s)	850
FspBI	CTAG	4 cut(s)	93, 324, 807, 937
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	2 cut(s)	440, 875
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	6 cut(s)	47, 278, 287, 299, 320, 837
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	400, 743
Hpy188I	TCNGA	6 cut(s)	59, 229, 286, 292, 304, 580
Hpy188III	TCNNGA	6 cut(s)	27, 324, 437, 758, 894, 926
Hpy8I	GTNNAC	2 cut(s)	400, 743
HpyAV	CCTTC	2 cut(s)	103, 199
HpyCH4IV	ACGT	2 cut(s)	345, 383
HpyCH4V	TGCA	4 cut(s)	86, 410, 908, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpyF3I	CTNAG	3 cut(s)	316, 579, 756
HpySE526I	ACGT	2 cut(s)	345, 383
Hsp92II	CATG	2 cut(s)	440, 875
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	6, 149, 691, 850, 890
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	4 cut(s)	93, 324, 807, 937
MaeII	ACGT	2 cut(s)	345, 383
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	5 cut(s)	8, 151, 693, 852, 892
MboI	GATC	5 cut(s)	6, 149, 691, 850, 890
MflI	RGATCY	2 cut(s)	6, 149
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	9 cut(s)	19, 39, 252, 596, 603, 618, 704, 842, 921
MlyI	GAGTC	2 cut(s)	56, 831
MmeI	TCCRAC	1 cut(s)	719
MnlI	CCTC	2 cut(s)	640, 765
MroXI	GAANNNNTTC	2 cut(s)	22, 726
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	870
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	4 cut(s)	133, 265, 395, 405
Mva1269I	GAATGC	3 cut(s)	133, 410, 500
MvaI	CCWGG	3 cut(s)	265, 395, 405
MwoI	GCNNNNNNNGC	1 cut(s)	540
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	5 cut(s)	6, 149, 691, 850, 890
NlaIII	CATG	2 cut(s)	440, 875
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	875
PagI	TCATGA	1 cut(s)	436
PctI	GAATGC	3 cut(s)	133, 410, 500
PdmI	GAANNNNTTC	2 cut(s)	22, 726
PfeI	GAWTC	4 cut(s)	278, 287, 299, 320
PleI	GAGTC	2 cut(s)	55, 831
PpsI	GAGTC	2 cut(s)	55, 831
Psp6I	CCWGG	3 cut(s)	263, 393, 403
PspGI	CCWGG	3 cut(s)	263, 393, 403
PspN4I	GGNNCC	1 cut(s)	627
PsuI	RGATCY	2 cut(s)	6, 149
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	1 cut(s)	638
Sau3AI	GATC	5 cut(s)	6, 149, 691, 850, 890
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	56, 831
ScrFI	CCNGG	4 cut(s)	133, 265, 395, 405
SduI	GDGCHC	1 cut(s)	116
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	870
SpeI	ACTAGT	1 cut(s)	806
Sse9I	AATT	9 cut(s)	19, 39, 252, 596, 603, 618, 704, 842, 921
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	4 cut(s)	93, 324, 807, 937
StyD4I	CCNGG	4 cut(s)	131, 263, 393, 403
TaiI	ACGT	2 cut(s)	348, 386
TaqI	TCGA	1 cut(s)	690
TasI	AATT	9 cut(s)	19, 39, 252, 596, 603, 618, 704, 842, 921
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	4 cut(s)	278, 287, 299, 320
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TseFI	GTSAC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	9 cut(s)	17, 140, 218, 249, 347, 453, 490, 579, 739
XapI	RAATTY	3 cut(s)	19, 603, 842
XbaI	TCTAGA	1 cut(s)	323
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmnI	GAANNNNTTC	2 cut(s)	22, 726
XspI	CTAG	4 cut(s)	93, 324, 807, 937
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.