FvH4_4g28291

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001459
Physical Location & Seq
Reverse (-)
28980855 .. 28985781
4927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28291.t2

Sequence Viewer

Length: 1410 bp
ATGAAGAATTATAATTTAAGAAGCACAGATGAGCATCTAAATAACTTAACAAGCTGGCTGCCTAATCAAACAGTGTCTGAACGATTGGCCAACACAGGTTTTAACATCAAATATTTTGAAAAGTTGCCGAGTGTTATAAATCATTGTCTGCCTCTTCTATCGGCTCTCTTAGAACGTTATGATTCTAGGGAAAGATGTTTTATTTTCAATGGTATTAAATGCGGGTTTTTCTTGGAGGATGTATATTATTGCACTGGCTTACCCGTTGATGGCGTGGAAGTAACTGGTGTTGTGAAAAGTAATAACGATGAGAAAGAAGAAATTTGTAGAATGTATTTAGGTGTGTCTGGGCTCTTAACGAAAGGCAAGATATCCTTGAAAAATCTTCGTGATAGATTCATAAATGCTGAAGATACTGACTATTACACTCGAGCATATCTTCTATATGTCATCGGGTCTTTTATTGTACCGGATAAGACCGGGAGATCTGTAGATGTGATGTTTTTGGAACAACTGAAGGATATTGACAAAACAGGGACGTTTGCATGGGGTGCGGCTCTGCTAGCTCATTTGCATGTAGAGTTGGAGACCGCTAGTGAAAGTTCTTTGGCTGGGCATTCGTACTCTTTAATGATTTGGGCCTTCCTCCATATCCCAAAACTTCTAAAGCTCTTGCCAAACACTGGAAGGAAGGGGCCGGATGAATTTCCCTTGTTGGTACAATGGACAAATTGGCTTTCGCTGGATTTGAAAAATAATTTCCATAAAAACCTGAAAAGCAAATTTTCTGACATCTTGGATAACTTGAAGGACGAAGATATTGTATGGCAACCTTACAAGAATCTGCAAAATCTGCCAAATGATCATCCTCAGCACCGTGAGAACTTTTTATGTAGGACTGTACTCATTTGCTATAACGAGGTGGTATATCATCGTCCTGATTTATGTCCAAAGCAGTATGGCATTGATAAACCAGAGTATAGTGGTGTACGGAAGGAGATTGCCATTTATAAGAAGCAGAGGAAACTTTCAGGGGAGATTGATTGGTCCAAGTATACTAGTGAAAAAGGGAAGGTTGACTATAGTAAATATATTCAGGAGTGGAAACATCGGAGCGAGTCCCTTTTGAAAGAAGCTTTAGGAGTTGAGGAGCATTCTGGCCCGACTTTGAGTTCTACACCATCAAGTATAGGGAATGTAAGATATGATTGCTCAAACACTCATTTTGAAGATGATGAGCCTGAAGTTGAGCCTTTGCAGCCTCCCCCATCAGAGGATGCTACTCCCCGGACGCAGGCGGATGCTTCTCCCAAGACGCCTGATGATGGTCATGGTAGTGGTGGTGAAGAGATTACGTGGAATACGTTTTATTTAGCCTTTAGCGGACAAGCACACCACAGCACTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

470

Amino Acids

53.57

Weight (kDa)

5.77

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 51 - 359 2.8e-41 Plant mobile domain
DUF1985 PF09331 61 - 186 3.1e-06 Domain of unknown function (DUF1985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 12, 137, 1011
AccB7I CCANNNNNTGG 1 cut(s) 683
AccI GTMKAC 1 cut(s) 1055
AciI CCGC 5 cut(s) 222, 554, 591, 1298, 1383
AclI AACGTT 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 3 cut(s) 321, 704, 782
AcuI CTGAAG 3 cut(s) 429, 536, 1263
AcyI GRCGYC 1 cut(s) 1316
AfaI GTAC 5 cut(s) 468, 623, 720, 903, 990
AfiI CCNNNNNNNGG 5 cut(s) 269, 683, 1273, 1294, 1325
AgsI TTSAA 7 cut(s) 119, 208, 379, 751, 808, 1129, 1229
AhlI ACTAGT 1 cut(s) 1058
AluBI AGCT 4 cut(s) 54, 566, 670, 1136
AluI AGCT 4 cut(s) 54, 566, 670, 1136
Alw26I GTCTC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 429
AoxI GGCC 4 cut(s) 87, 639, 695, 1159
ApeKI GCWGC 2 cut(s) 58, 1258
ApoI RAATTY 3 cut(s) 321, 704, 782
AspS9I GGNCC 4 cut(s) 639, 695, 1047, 1160
AsuC2I CCSGG 2 cut(s) 481, 1288
AsuHPI GGTGA 1 cut(s) 1355
AsuNHI GCTAGC 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 429
AvaII GGWCC 1 cut(s) 1047
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 2 cut(s) 45, 1270
BccI CCATC 4 cut(s) 263, 1189, 1276, 1319
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 2 cut(s) 481, 1288
BcoDI GTCTC 1 cut(s) 581
BcuI ACTAGT 1 cut(s) 1058
BfaI CTAG 4 cut(s) 186, 563, 594, 1059
BfmI CTRYAG 2 cut(s) 489, 1081
BglII AGATCT 1 cut(s) 485
BisI GCNGC 3 cut(s) 59, 555, 1259
BlsI GCNGC 3 cut(s) 60, 556, 1260
Bme1390I CCNGG 2 cut(s) 481, 1288
Bme18I GGWCC 1 cut(s) 1047
BmeT110I CYCGRG 1 cut(s) 429
BmgT120I GGNCC 4 cut(s) 639, 695, 1047, 1160
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 2 cut(s) 481, 1288
BmsI GCATC 3 cut(s) 43, 1267, 1291
BmtI GCTAGC 1 cut(s) 566
Bpu10I CCTNAGC 1 cut(s) 870
BpuMI CCSGG 2 cut(s) 481, 1288
BsaAI YACGTR 1 cut(s) 1356
BsaBI GATNNNNATC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 1316
BsaI GGTCTC 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 1286
BsaWI WCCGGW 1 cut(s) 469
Bsc4I CCNNNNNNNGG 5 cut(s) 269, 683, 1273, 1294, 1325
Bse1I ACTGG 4 cut(s) 259, 289, 688, 1408
Bse8I GATNNNNATC 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 1286
BseGI GGATG 5 cut(s) 244, 706, 865, 1282, 1306
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 5 cut(s) 269, 683, 1273, 1294, 1325
BseMII CTCAG 1 cut(s) 884
BseNI ACTGG 4 cut(s) 259, 289, 688, 1408
BseRI GAGGAG 1 cut(s) 1163
BseXI GCAGC 2 cut(s) 45, 1270
BseYI CCCAGC 1 cut(s) 611
BshFI GGCC 4 cut(s) 89, 641, 697, 1161
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 4 cut(s) 470, 480, 698, 1288
BslFI GGGAC 2 cut(s) 550, 1105
BslI CCNNNNNNNGG 5 cut(s) 269, 683, 1273, 1294, 1325
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 2 cut(s) 550, 1105
BsmI GAATGC 2 cut(s) 616, 1153
BsnI GGCC 4 cut(s) 89, 641, 697, 1161
Bso31I GGTCTC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 485, 862
BspACI CCGC 5 cut(s) 222, 554, 591, 1298, 1383
BspANI GGCC 4 cut(s) 89, 641, 697, 1161
BspCNI CTCAG 1 cut(s) 883
BspLI GGNNCC 1 cut(s) 696
BspOI GCTAGC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 581
BsrI ACTGG 4 cut(s) 259, 289, 688, 1408
BssECI CCNNGG 1 cut(s) 1286
BssMI GATC 2 cut(s) 485, 862
BssNAI GTATAC 1 cut(s) 1056
BssNI GRCGYC 1 cut(s) 1316
Bst1107I GTATAC 1 cut(s) 1056
Bst4CI ACNGT 3 cut(s) 73, 878, 901
Bst6I CTCTTC 2 cut(s) 159, 1341
BstACI GRCGYC 1 cut(s) 1316
BstAPI GCANNNNNTGC 2 cut(s) 551, 853
BstBAI YACGTR 1 cut(s) 1356
BstC8I GCNNGC 3 cut(s) 56, 564, 1296
BstDEI CTNAG 2 cut(s) 169, 870
BstF5I GGATG 5 cut(s) 244, 706, 865, 1282, 1306
BstKTI GATC 2 cut(s) 488, 865
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 2 cut(s) 485, 862
BstMWI GCNNNNNNNGC 4 cut(s) 551, 563, 853, 1258
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 479, 1286
BstSFI CTRYAG 2 cut(s) 489, 1081
BstV1I GCAGC 2 cut(s) 45, 1270
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 1403
BstYI RGATCY 1 cut(s) 485
BstZ17I GTATAC 1 cut(s) 1056
BsuRI GGCC 4 cut(s) 89, 641, 697, 1161
BtsCI GGATG 5 cut(s) 244, 706, 865, 1282, 1306
BtsIMutI CAGTG 4 cut(s) 78, 252, 681, 1401
Cac8I GCNNGC 3 cut(s) 56, 564, 1296
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 4 cut(s) 639, 695, 1047, 1160
CseI GACGC 2 cut(s) 1300, 1324
Csp6I GTAC 5 cut(s) 467, 622, 719, 902, 989
CviAII CATG 3 cut(s) 546, 575, 1331
CviQI GTAC 5 cut(s) 467, 622, 719, 902, 989
DdeI CTNAG 2 cut(s) 169, 870
DpnI GATC 2 cut(s) 487, 864
DpnII GATC 2 cut(s) 485, 862
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 159, 1341
EarI CTCTTC 2 cut(s) 159, 1341
EciI GGCGGA 1 cut(s) 1313
Eco24I GRGCYC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 581
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 1047
Eco57I CTGAAG 3 cut(s) 429, 536, 1263
Eco88I CYCGRG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 3 cut(s) 549, 578, 1334
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 2 cut(s) 550, 1105
FatI CATG 3 cut(s) 545, 574, 1330
FauI CCCGC 1 cut(s) 215
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 1055
Fnu4HI GCNGC 3 cut(s) 59, 555, 1259
FokI GGATG 5 cut(s) 251, 713, 852, 1289, 1313
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 3 cut(s) 59, 555, 1259
FspBI CTAG 4 cut(s) 186, 563, 594, 1059
GluI GCNGC 3 cut(s) 59, 555, 1259
GsaI CCCAGC 1 cut(s) 615
HaeIII GGCC 4 cut(s) 89, 641, 697, 1161
HapII CCGG 4 cut(s) 470, 480, 698, 1288
HgaI GACGC 2 cut(s) 1300, 1324
Hin1I GRCGYC 1 cut(s) 1316
Hin1II CATG 3 cut(s) 549, 578, 1334
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HindIII AAGCTT 1 cut(s) 1134
HinfI GANTC 4 cut(s) 182, 396, 841, 1118
HpaII CCGG 4 cut(s) 470, 480, 698, 1288
HphI GGTGA 1 cut(s) 1355
Hpy166II GTNNAC 3 cut(s) 989, 1056, 1078
Hpy188I TCNGA 4 cut(s) 79, 790, 1113, 1273
Hpy188III TCNNGA 3 cut(s) 389, 938, 1097
Hpy8I GTNNAC 3 cut(s) 989, 1056, 1078
HpyAV CCTTC 7 cut(s) 511, 652, 681, 685, 802, 988, 1066
HpyCH4III ACNGT 3 cut(s) 73, 878, 901
HpyCH4IV ACGT 4 cut(s) 175, 539, 1355, 1364
HpyCH4V TGCA 5 cut(s) 252, 545, 574, 847, 1258
HpyF10VI GCNNNNNNNGC 4 cut(s) 551, 563, 853, 1258
HpyF3I CTNAG 2 cut(s) 169, 870
HpySE526I ACGT 4 cut(s) 175, 539, 1355, 1364
Hsp92I GRCGYC 1 cut(s) 1316
Hsp92II CATG 3 cut(s) 549, 578, 1334
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 2 cut(s) 485, 862
LmnI GCTCC 2 cut(s) 1113, 1150
Lsp1109I GCAGC 2 cut(s) 45, 1270
LweI GCATC 3 cut(s) 43, 1267, 1291
MaeI CTAG 4 cut(s) 186, 563, 594, 1059
MaeII ACGT 4 cut(s) 175, 539, 1355, 1364
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 487, 864
MboI GATC 2 cut(s) 485, 862
MboII GAAGA 9 cut(s) 16, 146, 329, 377, 422, 431, 827, 1241, 1358
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 7 cut(s) 7, 13, 321, 704, 730, 757, 782
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 1127
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 9 cut(s) 162, 229, 656, 879, 913, 1014, 1141, 1267, 1272
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 6 cut(s) 17, 47, 102, 216, 356, 629
MslI CAYNNNNRTG 2 cut(s) 573, 1335
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 4 cut(s) 470, 480, 698, 1288
MspR9I CCNGG 2 cut(s) 481, 1288
Mva1269I GAATGC 2 cut(s) 616, 1153
MwoI GCNNNNNNNGC 4 cut(s) 551, 563, 853, 1258
NciI CCSGG 2 cut(s) 481, 1288
NdeII GATC 2 cut(s) 485, 862
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 3 cut(s) 549, 578, 1334
NlaIV GGNNCC 1 cut(s) 696
NmeAIII GCCGAG 1 cut(s) 153
NspI RCATGY 1 cut(s) 578
PaeR7I CTCGAG 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 1361
PctI GAATGC 2 cut(s) 616, 1153
PfeI GAWTC 3 cut(s) 182, 396, 841
PflMI CCANNNNNTGG 1 cut(s) 683
PkrI GCNGC 3 cut(s) 60, 556, 1260
PleI GAGTC 1 cut(s) 1126
PpsI GAGTC 1 cut(s) 1126
Ppu21I YACGTR 1 cut(s) 1356
PsiI TTATAA 3 cut(s) 12, 137, 1011
Psp1406I AACGTT 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 611
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 4 cut(s) 639, 695, 1047, 1160
PspXI VCTCGAGB 1 cut(s) 429
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 5 cut(s) 468, 623, 720, 903, 990
RsaNI GTAC 5 cut(s) 467, 622, 719, 902, 989
RseI CAYNNNNRTG 2 cut(s) 573, 1335
SaqAI TTAA 6 cut(s) 17, 47, 102, 216, 356, 629
SatI GCNGC 3 cut(s) 59, 555, 1259
Sau3AI GATC 2 cut(s) 485, 862
Sau96I GGNCC 4 cut(s) 639, 695, 1047, 1160
SchI GAGTC 1 cut(s) 1127
ScrFI CCNGG 2 cut(s) 481, 1288
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 3 cut(s) 43, 1267, 1291
SfcI CTRYAG 2 cut(s) 489, 1081
Sfr274I CTCGAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 1047
SlaI CTCGAG 1 cut(s) 429
SmiMI CAYNNNNRTG 2 cut(s) 573, 1335
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 1058
Sse9I AATT 7 cut(s) 7, 13, 321, 704, 730, 757, 782
SsiI CCGC 5 cut(s) 222, 554, 591, 1298, 1383
SspI AATATT 1 cut(s) 113
SspMI CTAG 4 cut(s) 186, 563, 594, 1059
StyD4I CCNGG 2 cut(s) 479, 1286
TaaI ACNGT 3 cut(s) 73, 878, 901
TaiI ACGT 4 cut(s) 178, 542, 1358, 1367
TaqI TCGA 1 cut(s) 430
TasI AATT 7 cut(s) 7, 13, 321, 704, 730, 757, 782
TatI WGTACW 1 cut(s) 901
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 3 cut(s) 182, 396, 841
Tru1I TTAA 6 cut(s) 17, 47, 102, 216, 356, 629
Tru9I TTAA 6 cut(s) 17, 47, 102, 216, 356, 629
TscAI CASTG 4 cut(s) 78, 259, 688, 1408
TseI GCWGC 2 cut(s) 58, 1258
TspDTI ATGAA 3 cut(s) 17, 388, 717
TspGWI ACGGA 1 cut(s) 1006
TspRI CASTG 4 cut(s) 78, 259, 688, 1408
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 1047
XapI RAATTY 3 cut(s) 321, 704, 782
XceI RCATGY 1 cut(s) 578
XhoI CTCGAG 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 1055
XspI CTAG 4 cut(s) 186, 563, 594, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.