Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009291.1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

52847 .. 55410

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009291.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgttatatgcgttgcaagagcactataacgaaaaagacagggttctcaaaatcaacaataagatcttatttttcggactagaagatgtccttctaatatgtggtcttccggttatgggaaaacttgtcatagaagactcaaattctcaatcagtggatgatcttctaggcccattgcccaatgaggctgtacgaatcaattctattaaactcagttggctgaaaaagacttttgaaaaggttcctagggatgtgattgcgcaaggaaccgaaagtcttgagtttgctaaatatgttagaggatttgccctcctcatattaggcacaaccattttttctactgcagaaggtagacatgtaagtctgggattcttggagtttttgcgcaacataggtgatataaagaatcttgaatggggtgtcgcaatgctctcacagttgcatctaagtttgggacgtggcggaccaaatattaatggccacgctttcttcctcatgatttgggcattggagcacattccaggatttgcaagcatctttttcagtaataaaacgaaagttgagaaaccaagcgagttcccattgtctcagagctggggacgaaagatgctagcagaacttgccaatagacatcaaagaaagagaaaagattatgatgaagtcttggttgccttaataattttgattcagccttattctaacaaagtcatctatcatcggcctgacttgtgcccaatgaagcttggttttgaagaggctgatctaagcgcttgtgaaccattggggctcaaaatggtaagaatcaccaagcaagatctgaataatgagtggtgcaagctgctcaaatcttttgtgaaaaagaaacatgactcaagtgcaggaaaagaaaaattaccatctaccttgaggccatacatccttcatctagatgatggacactgtggttttcatgctattgcagaattgctgggttttctggatgatggatggagaaaggtaagggatgatctaatcaaggaatttcagtcgaagcatgacgtgtatttgaaaatttctgggtcgcaagggagcattgatgagactatcaatagattgaactgctttaaaaaatatgcaccaaaagggagcattggatggttatgcctttcatgggtattgccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

387

Amino Acids

43.98

Weight (kDa)

8.77

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	360
Acc16I	TGCGCA	2 cut(s)	261, 386
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	3 cut(s)	142, 1019, 1050
AfaI	GTAC	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	769
AfiI	CCNNNNNNNGG	2 cut(s)	116, 1150
AflIII	ACRYGT	2 cut(s)	355, 1038
AgsI	TTSAA	5 cut(s)	236, 413, 752, 1048, 1096
AjiI	CACGTC	2 cut(s)	458, 1039
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	3 cut(s)	594, 742, 838
AluI	AGCT	3 cut(s)	594, 742, 838
Alw21I	GWGCWC	2 cut(s)	24, 516
Alw26I	GTCTC	2 cut(s)	591, 1073
Aor51HI	AGCGCT	1 cut(s)	769
AoxI	GGCC	4 cut(s)	169, 478, 719, 908
ApeKI	GCWGC	1 cut(s)	838
ApoI	RAATTY	3 cut(s)	142, 1019, 1050
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	2 cut(s)	199, 240
AspA2I	CCTAGG	1 cut(s)	245
AspLEI	GCGC	3 cut(s)	262, 387, 770
AspS9I	GGNCC	2 cut(s)	170, 464
AsuHPI	GGTGA	2 cut(s)	407, 796
AsuNHI	GCTAGC	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	464
AvrII	CCTAGG	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	789
BbsI	GAAGAC	2 cut(s)	98, 141
Bbv12I	GWGCWC	2 cut(s)	24, 516
BbvI	GCAGC	1 cut(s)	825
BccI	CCATC	5 cut(s)	904, 926, 977, 981, 1128
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	591, 1073
BfaI	CTAG	5 cut(s)	80, 167, 246, 611, 926
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	771
BglII	AGATCT	2 cut(s)	63, 814
BisI	GCNGC	1 cut(s)	839
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	840
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	464
BmgBI	CACGTC	2 cut(s)	458, 1039
BmgT120I	GGNCC	2 cut(s)	170, 464
BmiI	GGNNCC	2 cut(s)	243, 268
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	3 cut(s)	451, 543, 597
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	98, 141
BpuEI	CTTGAG	3 cut(s)	299, 856, 925
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 1150
Bse3DI	GCAATG	2 cut(s)	173, 432
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	7 cut(s)	163, 256, 915, 985, 992, 1009, 1139
BseLI	CCNNNNNNNGG	2 cut(s)	116, 1150
BseMI	GCAATG	2 cut(s)	173, 432
BseMII	CTCAG	2 cut(s)	226, 602
BseRI	GAGGAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	1 cut(s)	825
BseYI	CCCAGC	2 cut(s)	594, 967
BsgI	GTGCAG	1 cut(s)	897
BshFI	GGCC	4 cut(s)	171, 480, 721, 910
BsiHKAI	GWGCWC	2 cut(s)	24, 516
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	2 cut(s)	468, 612
BslI	CCNNNNNNNGG	2 cut(s)	116, 1150
BsmAI	GTCTC	2 cut(s)	591, 1073
BsmFI	GGGAC	2 cut(s)	468, 612
BsnI	GGCC	4 cut(s)	171, 480, 721, 910
Bsp1286I	GDGCHC	4 cut(s)	24, 516, 734, 789
Bsp143I	GATC	5 cut(s)	63, 160, 760, 814, 1006
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	4 cut(s)	171, 480, 721, 910
BspCNI	CTCAG	2 cut(s)	225, 601
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	243, 268
BspMAI	CTGCAG	1 cut(s)	346
BspOI	GCTAGC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	173, 432
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	5 cut(s)	63, 160, 760, 814, 1006
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	438, 941
Bst6I	CTCTTC	1 cut(s)	747
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	532, 612, 836
BstDEI	CTNAG	4 cut(s)	212, 446, 588, 764
BstF5I	GGATG	7 cut(s)	163, 256, 915, 985, 992, 1009, 1139
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	3 cut(s)	262, 387, 770
BstKTI	GATC	5 cut(s)	66, 163, 763, 817, 1009
BstMAI	GTCTC	2 cut(s)	591, 1073
BstMBI	GATC	5 cut(s)	63, 160, 760, 814, 1006
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	734
BstV1I	GCAGC	1 cut(s)	825
BstV2I	GAAGAC	2 cut(s)	98, 141
BstX2I	RGATCY	2 cut(s)	63, 814
BstYI	RGATCY	2 cut(s)	63, 814
BsuRI	GGCC	4 cut(s)	171, 480, 721, 910
BtrI	CACGTC	2 cut(s)	458, 1039
BtsCI	GGATG	7 cut(s)	163, 256, 915, 985, 992, 1009, 1139
BtsIMutI	CAGTG	2 cut(s)	159, 937
Cac8I	GCNNGC	3 cut(s)	532, 612, 836
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	3 cut(s)	262, 387, 770
Cfr13I	GGNCC	2 cut(s)	170, 464
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	6 cut(s)	356, 496, 866, 950, 1034, 1149
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	4 cut(s)	212, 446, 588, 764
DpnI	GATC	5 cut(s)	65, 162, 762, 816, 1008
DpnII	GATC	5 cut(s)	63, 160, 760, 814, 1006
DraI	TTTAAA	1 cut(s)	1105
DrdI	GACNNNNNNGTC	1 cut(s)	360
DseDI	GACNNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
EciI	GGCGGA	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	464
Eco47III	AGCGCT	1 cut(s)	769
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	6 cut(s)	359, 499, 869, 953, 1037, 1152
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	468, 612
FatI	CATG	6 cut(s)	355, 495, 865, 949, 1033, 1148
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	839
FokI	GGATG	7 cut(s)	170, 263, 902, 992, 999, 1016, 1146
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	1 cut(s)	839
FspBI	CTAG	5 cut(s)	80, 167, 246, 611, 926
FspI	TGCGCA	2 cut(s)	261, 386
GlaI	GCGC	3 cut(s)	261, 386, 769
GluI	GCNGC	1 cut(s)	839
GsaI	CCCAGC	2 cut(s)	598, 971
HaeII	RGCGCY	1 cut(s)	771
HaeIII	GGCC	4 cut(s)	171, 480, 721, 910
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	3 cut(s)	262, 387, 770
Hin1II	CATG	6 cut(s)	359, 499, 869, 953, 1037, 1152
Hin6I	GCGC	3 cut(s)	260, 385, 768
HinP1I	GCGC	3 cut(s)	260, 385, 768
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	7 cut(s)	137, 195, 369, 406, 685, 801, 869
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	407, 796
Hpy166II	GTNNAC	2 cut(s)	353, 776
Hpy188I	TCNGA	3 cut(s)	77, 591, 819
Hpy188III	TCNNGA	5 cut(s)	278, 410, 496, 926, 977
Hpy8I	GTNNAC	2 cut(s)	353, 776
HpyAV	CCTTC	3 cut(s)	101, 341, 929
HpyCH4III	ACNGT	2 cut(s)	438, 941
HpyCH4IV	ACGT	2 cut(s)	457, 1038
HpyCH4V	TGCA	8 cut(s)	16, 344, 442, 530, 834, 878, 959, 1115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	4 cut(s)	212, 446, 588, 764
HpySE526I	ACGT	2 cut(s)	457, 1038
Hsp92II	CATG	6 cut(s)	359, 499, 869, 953, 1037, 1152
HspAI	GCGC	3 cut(s)	260, 385, 768
Kzo9I	GATC	5 cut(s)	63, 160, 760, 814, 1006
LmnI	GCTCC	3 cut(s)	511, 1068, 1125
Lsp1109I	GCAGC	1 cut(s)	825
LweI	GCATC	3 cut(s)	451, 543, 597
MaeI	CTAG	5 cut(s)	80, 167, 246, 611, 926
MaeII	ACGT	2 cut(s)	457, 1038
MalI	GATC	5 cut(s)	65, 162, 762, 816, 1008
MboI	GATC	5 cut(s)	63, 160, 760, 814, 1006
MboII	GAAGA	6 cut(s)	95, 98, 146, 155, 481, 764
MflI	RGATCY	2 cut(s)	63, 814
MhlI	GDGCHC	4 cut(s)	24, 516, 734, 789
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	7 cut(s)	142, 199, 678, 890, 962, 1019, 1050
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	2 cut(s)	131, 863
MnlI	CCTC	7 cut(s)	178, 293, 320, 323, 503, 748, 900
Mox20I	TGGCCA	1 cut(s)	480
MroXI	GAANNNNTTC	2 cut(s)	199, 240
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	4 cut(s)	207, 474, 674, 1104
MslI	CAYNNNNRTG	1 cut(s)	927
Msp20I	TGGCCA	1 cut(s)	480
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	5 cut(s)	63, 160, 760, 814, 1006
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	6 cut(s)	359, 499, 869, 953, 1037, 1152
NlaIV	GGNNCC	2 cut(s)	243, 268
NsbI	TGCGCA	2 cut(s)	261, 386
NspI	RCATGY	1 cut(s)	359
PagI	TCATGA	1 cut(s)	495
PciI	ACATGT	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	199, 240
PfeI	GAWTC	5 cut(s)	195, 369, 406, 685, 801
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	1 cut(s)	840
PleI	GAGTC	2 cut(s)	131, 863
PpsI	GAGTC	2 cut(s)	131, 863
PscI	ACATGT	1 cut(s)	355
PshBI	ATTAAT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	2 cut(s)	594, 967
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	243, 268
PspPI	GGNCC	2 cut(s)	170, 464
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	63, 814
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	207, 474, 674, 1104
SatI	GCNGC	1 cut(s)	839
Sau3AI	GATC	5 cut(s)	63, 160, 760, 814, 1006
Sau96I	GGNCC	2 cut(s)	170, 464
SchI	GAGTC	2 cut(s)	131, 863
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	4 cut(s)	24, 516, 734, 789
SfaNI	GCATC	3 cut(s)	451, 543, 597
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	927
SmlI	CTYRAG	3 cut(s)	278, 871, 904
SmoI	CTYRAG	3 cut(s)	278, 871, 904
Sse9I	AATT	7 cut(s)	142, 199, 678, 890, 962, 1019, 1050
SsiI	CCGC	1 cut(s)	462
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	5 cut(s)	80, 167, 246, 611, 926
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	438, 941
TaiI	ACGT	2 cut(s)	460, 1041
TaqI	TCGA	1 cut(s)	1028
TasI	AATT	7 cut(s)	142, 199, 678, 890, 962, 1019, 1050
TfiI	GAWTC	5 cut(s)	195, 369, 406, 685, 801
Tru1I	TTAA	4 cut(s)	207, 474, 674, 1104
Tru9I	TTAA	4 cut(s)	207, 474, 674, 1104
TscAI	CASTG	2 cut(s)	159, 944
TseI	GCWGC	1 cut(s)	838
TspDTI	ATGAA	5 cut(s)	672, 752, 911, 938, 1137
TspRI	CASTG	2 cut(s)	159, 944
VpaK11BI	GGWCC	1 cut(s)	464
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	3 cut(s)	142, 1019, 1050
XbaI	TCTAGA	1 cut(s)	925
XceI	RCATGY	1 cut(s)	359
XmaJI	CCTAGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	352
XmnI	GAANNNNTTC	2 cut(s)	199, 240
XspI	CTAG	5 cut(s)	80, 167, 246, 611, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.