Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

39101164 .. 39102452

Gene Structure 1289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTGCTGATAGGGGAGAGATTATTCCTAGGGAAAACTTAGCTATTTTGGCTCAATGGAAGGTGGATGATACAGTCCTTGCAACATTAGAGTGGACGGGGTTCAATTATTTATATGATTTAGCAGTGAAGGTGGGTAGAAATCAGCATGTCAATAGCATGATAGATGCTCTTGTGAAGCATTATGACAAAAATGACATGTGTTTAAAAGTCCAGGACCAACACTTATTCTTTGGATTAGAAGACGTGCTGTTCATTAGTGGGCTTAAGGTGGAGGGGAAGCTAGTGACTAAGGGAGGGACAGAAGAAGCCATCCAGGTAAGTAGAGTCCAAGATGAAGAAGGTAATAGATATGTGGAATTTTTGGGTAATGTGCCATCTGAGTACATGAAGGAGGGCGGCAAAGTTATAACTTTTGAAGGGTTGCGAAGGACGTTCGAGAAGGTACCCAGAGATGTCGATGAGGAAACATTTGCTAGACATGTTAGAGCCTTTGCTGTCTATGTTGTCAACACGACAATCACGGCCATCCAGGTAAGTAGAGTCCAAGATGAAGAAGGTAATAGATATGTGGAATTTTTGGGTAATGTGCCATCTGAGTACATGAACGAGGGCGGCAAAGCTATAACTTTTGAAGGGTTGCGAAGGACGTTCGAGAAGGTACCCAGAGATGTCGATGAGGAAACATTTGCTAGACATGTTAGAGCCTTTGCCGTCTATGTTGTCAACACGACAATCACGGTGACCACCGAGAATAAATATGCGAGTGTGGCCTGCTTGAGGGCCTTTTCTGACATTCACCAAATAAAGAACTTCGCATGGGGAGTTGCAATGCTTTCCCAAGTCCACTATAGTTTGATGAAATATGGGACCAAGAAGGGGGCTAATATTGGAGGTCACATCTGGGCATTATCCCTTTCTGAAAAGCTTGCTAACAGGAACCGGCATCAATCCTACAGTCAGCTGCTGGATCAGCCTTGCGAGGTTGATTGGAATCCTTATTCTAGGCTGGGAGATACTTTTCTCCCTGAGGGGATTAGCAACCAGCAACGGATGAGAGCGTATCGTGGGGTTCTAGTCAACGCTTTCCACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

365

Amino Acids

41.59

Weight (kDa)

6.24

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
Acc65I	GGTACC	2 cut(s)	445, 661
AccB1I	GGYRCC	2 cut(s)	445, 661
AciI	CCGC	2 cut(s)	399, 615
AclWI	GGATC	1 cut(s)	978
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	359, 575
AfaI	GTAC	4 cut(s)	386, 447, 602, 663
AfiI	CCNNNNNNNGG	2 cut(s)	780, 879
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	3 cut(s)	198, 481, 697
AgsI	TTSAA	3 cut(s)	106, 419, 635
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	213, 315, 531
AluBI	AGCT	5 cut(s)	44, 283, 623, 928, 964
AluI	AGCT	5 cut(s)	44, 283, 623, 928, 964
AlwI	GGATC	1 cut(s)	978
AlwNI	CAGNNNCTG	1 cut(s)	967
AoxI	GGCC	3 cut(s)	525, 771, 783
ApeKI	GCWGC	2 cut(s)	5, 964
ApoI	RAATTY	2 cut(s)	359, 575
Asp718I	GGTACC	2 cut(s)	445, 661
AspA2I	CCTAGG	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	217, 783, 870
AsuHPI	GGTGA	2 cut(s)	754, 791
AvaII	GGWCC	2 cut(s)	217, 870
AvrII	CCTAGG	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	1029
BanI	GGYRCC	2 cut(s)	445, 661
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	951
BccI	CCATC	4 cut(s)	320, 385, 536, 601
BceAI	ACGGC	2 cut(s)	540, 698
BciT130I	CCWGG	3 cut(s)	215, 317, 533
BfaI	CTAG	6 cut(s)	30, 284, 477, 693, 1005, 1076
BfmI	CTRYAG	2 cut(s)	850, 955
BfrI	CTTAAG	1 cut(s)	266
BisI	GCNGC	4 cut(s)	6, 400, 616, 965
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	4 cut(s)	7, 401, 617, 966
Bme1390I	CCNGG	3 cut(s)	215, 317, 533
Bme18I	GGWCC	2 cut(s)	217, 870
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	217, 783, 870
BmiI	GGNNCC	4 cut(s)	447, 663, 871, 941
BmrFI	CCNGG	3 cut(s)	215, 317, 533
BmsI	GCATC	2 cut(s)	157, 955
BpiI	GAAGAC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	993
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	780, 879
Bse118I	RCCGGY	1 cut(s)	942
Bse21I	CCTNAGG	1 cut(s)	1029
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	1 cut(s)	993
BseBI	CCWGG	3 cut(s)	215, 317, 533
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	4 cut(s)	73, 312, 528, 1059
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	2 cut(s)	780, 879
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	3 cut(s)	372, 588, 1020
BseXI	GCAGC	1 cut(s)	951
BseYI	CCCAGC	1 cut(s)	1009
BshFI	GGCC	3 cut(s)	527, 773, 785
BshNI	GGYRCC	2 cut(s)	445, 661
BsiSI	CCGG	1 cut(s)	943
BslFI	GGGAC	2 cut(s)	313, 883
BslI	CCNNNNNNNGG	2 cut(s)	780, 879
BsmFI	GGGAC	2 cut(s)	313, 883
BsnI	GGCC	3 cut(s)	527, 773, 785
Bsp143I	GATC	1 cut(s)	970
BspACI	CCGC	2 cut(s)	399, 615
BspANI	GGCC	3 cut(s)	527, 773, 785
BspCNI	CTCAG	3 cut(s)	373, 589, 1021
BspLI	GGNNCC	4 cut(s)	447, 663, 871, 941
BspPI	GGATC	1 cut(s)	978
BspT107I	GGYRCC	2 cut(s)	445, 661
BspTI	CTTAAG	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	942
BssAI	RCCGGY	1 cut(s)	942
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	970
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	3 cut(s)	215, 317, 533
Bst4CI	ACNGT	3 cut(s)	76, 742, 959
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	775, 930
BstDEI	CTNAG	5 cut(s)	40, 291, 381, 597, 1029
BstEII	GGTNACC	1 cut(s)	742
BstENI	CCTNNNNNAGG	1 cut(s)	778
BstF5I	GGATG	4 cut(s)	73, 312, 528, 1059
BstKTI	GATC	1 cut(s)	973
BstMBI	GATC	1 cut(s)	970
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 770, 973
BstNI	CCWGG	3 cut(s)	215, 317, 533
BstNSI	RCATGY	4 cut(s)	152, 202, 485, 701
BstPI	GGTNACC	1 cut(s)	742
BstSCI	CCNGG	3 cut(s)	213, 315, 531
BstSFI	CTRYAG	2 cut(s)	850, 955
BstV1I	GCAGC	1 cut(s)	951
BstV2I	GAAGAC	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	1029
BsuRI	GGCC	3 cut(s)	527, 773, 785
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	4 cut(s)	73, 312, 528, 1059
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	775, 930
CaiI	CAGNNNCTG	1 cut(s)	967
Cfr10I	RCCGGY	1 cut(s)	942
Cfr13I	GGNCC	3 cut(s)	217, 783, 870
Csp6I	GTAC	4 cut(s)	385, 446, 601, 662
CviAII	CATG	8 cut(s)	149, 160, 199, 388, 482, 604, 698, 819
CviQI	GTAC	4 cut(s)	385, 446, 601, 662
DdeI	CTNAG	5 cut(s)	40, 291, 381, 597, 1029
DpnI	GATC	1 cut(s)	972
DpnII	GATC	1 cut(s)	970
DraI	TTTAAA	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	217, 870
Eco81I	CCTNAGG	1 cut(s)	1029
Eco91I	GGTNACC	1 cut(s)	742
EcoNI	CCTNNNNNAGG	1 cut(s)	778
EcoO109I	RGGNCCY	1 cut(s)	783
EcoO65I	GGTNACC	1 cut(s)	742
EcoRII	CCWGG	3 cut(s)	213, 315, 531
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	8 cut(s)	152, 163, 202, 391, 485, 607, 701, 822
FaqI	GGGAC	2 cut(s)	313, 883
FatI	CATG	8 cut(s)	148, 159, 198, 387, 481, 603, 697, 818
Fnu4HI	GCNGC	4 cut(s)	6, 400, 616, 965
FokI	GGATG	4 cut(s)	80, 299, 515, 1066
Fsp4HI	GCNGC	4 cut(s)	6, 400, 616, 965
FspBI	CTAG	6 cut(s)	30, 284, 477, 693, 1005, 1076
GluI	GCNGC	4 cut(s)	6, 400, 616, 965
GsaI	CCCAGC	1 cut(s)	1013
HaeIII	GGCC	3 cut(s)	527, 773, 785
HapII	CCGG	1 cut(s)	943
Hin1II	CATG	8 cut(s)	152, 163, 202, 391, 485, 607, 701, 822
HincII	GTYRAC	3 cut(s)	511, 727, 1081
HindII	GTYRAC	3 cut(s)	511, 727, 1081
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	3 cut(s)	327, 543, 994
HpaII	CCGG	1 cut(s)	943
HphI	GGTGA	2 cut(s)	754, 791
Hpy166II	GTNNAC	5 cut(s)	96, 511, 727, 847, 1081
Hpy188I	TCNGA	4 cut(s)	382, 598, 793, 922
Hpy188III	TCNNGA	2 cut(s)	439, 655
Hpy8I	GTNNAC	5 cut(s)	96, 511, 727, 847, 1081
HpyCH4III	ACNGT	3 cut(s)	76, 742, 959
HpyCH4IV	ACGT	3 cut(s)	246, 434, 650
HpyCH4V	TGCA	2 cut(s)	83, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 770, 973
HpyF3I	CTNAG	5 cut(s)	40, 291, 381, 597, 1029
HpySE526I	ACGT	3 cut(s)	246, 434, 650
Hsp92II	CATG	8 cut(s)	152, 163, 202, 391, 485, 607, 701, 822
KpnI	GGTACC	2 cut(s)	449, 665
Kzo9I	GATC	1 cut(s)	970
Lsp1109I	GCAGC	1 cut(s)	951
LweI	GCATC	2 cut(s)	157, 955
MaeI	CTAG	6 cut(s)	30, 284, 477, 693, 1005, 1076
MaeII	ACGT	3 cut(s)	246, 434, 650
MaeIII	GTNAC	3 cut(s)	286, 742, 896
MalI	GATC	1 cut(s)	972
MboI	GATC	1 cut(s)	970
MboII	GAAGA	4 cut(s)	254, 317, 350, 566
MluCI	AATT	3 cut(s)	106, 359, 575
MlyI	GAGTC	2 cut(s)	336, 552
MseI	TTAA	2 cut(s)	206, 267
MslI	CAYNNNNRTG	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	964
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	1 cut(s)	943
MspR9I	CCNGG	3 cut(s)	215, 317, 533
MvaI	CCWGG	3 cut(s)	215, 317, 533
MwoI	GCNNNNNNNGC	3 cut(s)	50, 770, 973
NdeII	GATC	1 cut(s)	970
NlaIII	CATG	8 cut(s)	152, 163, 202, 391, 485, 607, 701, 822
NlaIV	GGNNCC	4 cut(s)	447, 663, 871, 941
NmuCI	GTSAC	3 cut(s)	286, 742, 896
NspI	RCATGY	4 cut(s)	152, 202, 485, 701
PciI	ACATGT	3 cut(s)	198, 481, 697
PfeI	GAWTC	1 cut(s)	994
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	7, 401, 617, 966
PleI	GAGTC	2 cut(s)	335, 551
PpsI	GAGTC	2 cut(s)	335, 551
PscI	ACATGT	3 cut(s)	198, 481, 697
PsiI	TTATAA	1 cut(s)	410
Psp6I	CCWGG	3 cut(s)	213, 315, 531
PspEI	GGTNACC	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	1009
PspGI	CCWGG	3 cut(s)	213, 315, 531
PspN4I	GGNNCC	4 cut(s)	447, 663, 871, 941
PspPI	GGNCC	3 cut(s)	217, 783, 870
PstNI	CAGNNNCTG	1 cut(s)	967
PvuII	CAGCTG	1 cut(s)	964
RsaI	GTAC	4 cut(s)	386, 447, 602, 663
RsaNI	GTAC	4 cut(s)	385, 446, 601, 662
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	206, 267
SatI	GCNGC	4 cut(s)	6, 400, 616, 965
Sau3AI	GATC	1 cut(s)	970
Sau96I	GGNCC	3 cut(s)	217, 783, 870
SchI	GAGTC	2 cut(s)	336, 552
ScrFI	CCNGG	3 cut(s)	215, 317, 533
SfaNI	GCATC	2 cut(s)	157, 955
SfcI	CTRYAG	2 cut(s)	850, 955
SinI	GGWCC	2 cut(s)	217, 870
SmiMI	CAYNNNNRTG	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	266, 778
SmoI	CTYRAG	2 cut(s)	266, 778
Sse9I	AATT	3 cut(s)	106, 359, 575
SsiI	CCGC	2 cut(s)	399, 615
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	6 cut(s)	30, 284, 477, 693, 1005, 1076
StyD4I	CCNGG	3 cut(s)	213, 315, 531
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	76, 742, 959
TaiI	ACGT	3 cut(s)	249, 437, 653
TaqI	TCGA	4 cut(s)	438, 459, 654, 675
TasI	AATT	3 cut(s)	106, 359, 575
TatI	WGTACW	2 cut(s)	384, 600
TauI	GCSGC	2 cut(s)	402, 618
TfiI	GAWTC	1 cut(s)	994
Tru1I	TTAA	2 cut(s)	206, 267
Tru9I	TTAA	2 cut(s)	206, 267
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	3 cut(s)	286, 742, 896
TseI	GCWGC	2 cut(s)	5, 964
Tsp45I	GTSAC	3 cut(s)	286, 742, 896
TspDTI	ATGAA	6 cut(s)	244, 351, 404, 567, 620, 875
TspGWI	ACGGA	1 cut(s)	1066
TspRI	CASTG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	217, 870
XagI	CCTNNNNNAGG	1 cut(s)	778
XapI	RAATTY	2 cut(s)	359, 575
XceI	RCATGY	4 cut(s)	152, 202, 485, 701
XmaJI	CCTAGG	1 cut(s)	29
XspI	CTAG	6 cut(s)	30, 284, 477, 693, 1005, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.