Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

28172829 .. 28181489

Gene Structure 8661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG174000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAAACAATTGCAGGTCATTAAGACATACATGGACATTTTGGAGAAAGATATGAAGAAAAAGAACGTTAAAGCGGGATTCATTGGACTAGATGCATCGGCACTAGAAGGAACTGGGTTTGATCATATATATCGACTGGCCAAATTATTGAATCGAAGTTCTCATGACAACCAGATGTTATATGCGTTGCAAGAGCACTATAACGAAAAAGACAGGGTTCTCAAAATCAACAATAAGATCTTATTTTTCGGACTAGAAGATGTCCTTCTAATATGTGGTCTTCCGGTTATGGGAAAACTTGTCGTAGAAGACTCAAATTCTCAATCAGTGGATGATCTTCTAGGCCCATTGCCCAATGAGGCTGTACGAATCAATTCTATTAAACTCAGTTGGCTGAAAAAGACTTTTGAAAAGGTTCCTAGGGATGTGATTGCGCAAGGAACCGAAAGTCTTGAGTTTGCTAAATATGTTAGAGGATTTGCCCTCTTCATATTAGGCACAACCATTTTTTCTACTGCAGAAGGTAGACATGTAAGTCAGGGATTTTTGGAGTTTTTGCGCAACATAGGTGATATAAAGAATCTTGAATGGGGTGTCGCAATGCTCTCACAGTTGCATCTAAGTTTGGGACGTGGCGGACCAAATATTAATGGCCACGCTTTCTTCCTCATGATTTGGGCATTGGAGCACATTCCAAGATTTGCAAGCATCTTTTTCAGTAATAAAACGAAAGTTGAGAAACCAAGCGAGTTCCCATTGTCTCTGAGCTGGGGACGAAAGATGCTAGCAGAACTTGCCAATAGACATCAAAGAAAGAGAAAAGATTATGATGAAGTCTTGGTTACCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

283

Amino Acids

32.22

Weight (kDa)

9.23

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	84 - 276	4.2e-17	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	534
Acc16I	TGCGCA	2 cut(s)	435, 560
Acc36I	ACCTGC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	2 cut(s)	74, 636
AclI	AACGTT	1 cut(s)	66
AcoI	YGGCCR	2 cut(s)	138, 652
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	151, 410, 587
AjiI	CACGTC	1 cut(s)	632
AluBI	AGCT	1 cut(s)	768
AluI	AGCT	1 cut(s)	768
Alw21I	GWGCWC	2 cut(s)	198, 690
Alw26I	GTCTC	1 cut(s)	765
AoxI	GGCC	3 cut(s)	138, 343, 652
ApoI	RAATTY	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	2 cut(s)	373, 414
AspA2I	CCTAGG	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	436, 561
AspS9I	GGNCC	2 cut(s)	344, 638
AsuHPI	GGTGA	1 cut(s)	581
AsuNHI	GCTAGC	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	638
AvrII	CCTAGG	1 cut(s)	419
BalI	TGGCCA	2 cut(s)	140, 654
BbsI	GAAGAC	2 cut(s)	272, 315
Bbv12I	GWGCWC	2 cut(s)	198, 690
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	6 cut(s)	89, 104, 254, 341, 420, 785
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	4
BglII	AGATCT	1 cut(s)	237
BlnI	CCTAGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	344, 638
BmiI	GGNNCC	2 cut(s)	417, 442
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	5 cut(s)	82, 104, 625, 717, 771
BmtI	GCTAGC	1 cut(s)	788
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	2 cut(s)	272, 315
BpuEI	CTTGAG	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	118, 141
Bse3DI	GCAATG	2 cut(s)	347, 606
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	337, 430
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	2 cut(s)	347, 606
BseMII	CTCAG	2 cut(s)	400, 755
BseNI	ACTGG	2 cut(s)	118, 141
BseYI	CCCAGC	1 cut(s)	768
BshFI	GGCC	3 cut(s)	140, 345, 654
BsiHKAI	GWGCWC	2 cut(s)	198, 690
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	642, 786
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	765
BsmFI	GGGAC	2 cut(s)	642, 786
BsnI	GGCC	3 cut(s)	140, 345, 654
Bsp1286I	GDGCHC	2 cut(s)	198, 690
Bsp143I	GATC	3 cut(s)	121, 237, 334
BspACI	CCGC	2 cut(s)	74, 636
BspANI	GGCC	3 cut(s)	140, 345, 654
BspCNI	CTCAG	2 cut(s)	399, 756
BspHI	TCATGA	2 cut(s)	163, 669
BspLI	GGNNCC	2 cut(s)	417, 442
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	4
BspOI	GCTAGC	1 cut(s)	788
BsrDI	GCAATG	2 cut(s)	347, 606
BsrI	ACTGG	2 cut(s)	118, 141
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	121, 237, 334
BssT1I	CCWWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	706, 786
BstDEI	CTNAG	3 cut(s)	386, 620, 764
BstEII	GGTNACC	1 cut(s)	841
BstF5I	GGATG	2 cut(s)	337, 430
BstHHI	GCGC	2 cut(s)	436, 561
BstKTI	GATC	3 cut(s)	124, 240, 337
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	3 cut(s)	121, 237, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNSI	RCATGY	1 cut(s)	533
BstPI	GGTNACC	1 cut(s)	841
BstSFI	CTRYAG	1 cut(s)	516
BstV2I	GAAGAC	2 cut(s)	272, 315
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	140, 345, 654
BtrI	CACGTC	1 cut(s)	632
BtsCI	GGATG	2 cut(s)	337, 430
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	2 cut(s)	706, 786
CciI	TCATGA	2 cut(s)	163, 669
CfoI	GCGC	2 cut(s)	436, 561
Cfr13I	GGNCC	2 cut(s)	344, 638
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	4 cut(s)	31, 164, 530, 670
CviJI	RGCY	6 cut(s)	140, 345, 362, 394, 654, 768
CviKI_1	RGCY	6 cut(s)	140, 345, 362, 394, 654, 768
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	3 cut(s)	386, 620, 764
DpnI	GATC	3 cut(s)	123, 239, 336
DpnII	GATC	3 cut(s)	121, 237, 334
DrdI	GACNNNNNNGTC	1 cut(s)	534
DseDI	GACNNNNNNGTC	1 cut(s)	534
EaeI	YGGCCR	2 cut(s)	138, 652
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	841
EcoO65I	GGTNACC	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	4 cut(s)	34, 167, 533, 673
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	642, 786
FatI	CATG	4 cut(s)	30, 163, 529, 669
FauI	CCCGC	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	526
FokI	GGATG	2 cut(s)	344, 437
FspBI	CTAG	6 cut(s)	89, 104, 254, 341, 420, 785
FspI	TGCGCA	2 cut(s)	435, 560
GlaI	GCGC	2 cut(s)	435, 560
GsaI	CCCAGC	1 cut(s)	772
HaeIII	GGCC	3 cut(s)	140, 345, 654
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	2 cut(s)	436, 561
Hin1II	CATG	4 cut(s)	34, 167, 533, 673
Hin6I	GCGC	2 cut(s)	434, 559
HinP1I	GCGC	2 cut(s)	434, 559
HinfI	GANTC	5 cut(s)	78, 151, 311, 369, 580
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	2 cut(s)	251, 765
Hpy188III	TCNNGA	4 cut(s)	164, 452, 584, 670
Hpy8I	GTNNAC	1 cut(s)	527
HpyAV	CCTTC	3 cut(s)	101, 275, 515
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	2 cut(s)	66, 631
HpyCH4V	TGCA	6 cut(s)	13, 95, 190, 518, 616, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	3 cut(s)	386, 620, 764
HpySE526I	ACGT	2 cut(s)	66, 631
Hsp92II	CATG	4 cut(s)	34, 167, 533, 673
HspAI	GCGC	2 cut(s)	434, 559
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 237, 334
LmnI	GCTCC	1 cut(s)	685
LpnPI	CCDG	7 cut(s)	99, 122, 185, 199, 297, 524, 754
LweI	GCATC	5 cut(s)	82, 104, 625, 717, 771
MaeI	CTAG	6 cut(s)	89, 104, 254, 341, 420, 785
MaeII	ACGT	2 cut(s)	66, 631
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	3 cut(s)	123, 239, 336
MboI	GATC	3 cut(s)	121, 237, 334
MboII	GAAGA	7 cut(s)	67, 269, 272, 320, 329, 478, 655
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	198, 690
MlsI	TGGCCA	2 cut(s)	140, 654
MluCI	AATT	4 cut(s)	8, 143, 316, 373
MluNI	TGGCCA	2 cut(s)	140, 654
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	352, 467, 494, 677
Mox20I	TGGCCA	2 cut(s)	140, 654
Mph1103I	ATGCAT	1 cut(s)	97
MroXI	GAANNNNTTC	2 cut(s)	373, 414
MscI	TGGCCA	2 cut(s)	140, 654
MseI	TTAA	4 cut(s)	21, 69, 381, 648
Msp20I	TGGCCA	2 cut(s)	140, 654
MspI	CCGG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	794
NdeII	GATC	3 cut(s)	121, 237, 334
NheI	GCTAGC	1 cut(s)	784
NlaIII	CATG	4 cut(s)	34, 167, 533, 673
NlaIV	GGNNCC	2 cut(s)	417, 442
NsbI	TGCGCA	2 cut(s)	435, 560
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	1 cut(s)	533
PagI	TCATGA	2 cut(s)	163, 669
PciI	ACATGT	1 cut(s)	529
PdmI	GAANNNNTTC	2 cut(s)	373, 414
PfeI	GAWTC	4 cut(s)	78, 151, 369, 580
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PscI	ACATGT	1 cut(s)	529
PshBI	ATTAAT	1 cut(s)	648
Psp1406I	AACGTT	1 cut(s)	66
PspEI	GGTNACC	1 cut(s)	841
PspFI	CCCAGC	1 cut(s)	768
PspN4I	GGNNCC	2 cut(s)	417, 442
PspPI	GGNCC	2 cut(s)	344, 638
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	21, 69, 381, 648
Sau3AI	GATC	3 cut(s)	121, 237, 334
Sau96I	GGNCC	2 cut(s)	344, 638
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	198, 690
SetI	ASST	8 cut(s)	18, 69, 417, 526, 571, 634, 770, 848
SfaNI	GCATC	5 cut(s)	82, 104, 625, 717, 771
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	4 cut(s)	8, 143, 316, 373
SsiI	CCGC	2 cut(s)	74, 636
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	6 cut(s)	89, 104, 254, 341, 420, 785
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	2 cut(s)	69, 634
TaqI	TCGA	2 cut(s)	133, 154
TasI	AATT	4 cut(s)	8, 143, 316, 373
TfiI	GAWTC	4 cut(s)	78, 151, 369, 580
Tru1I	TTAA	4 cut(s)	21, 69, 381, 648
Tru9I	TTAA	4 cut(s)	21, 69, 381, 648
TscAI	CASTG	1 cut(s)	333
TspDTI	ATGAA	5 cut(s)	17, 68, 70, 478, 846
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	638
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	533
XmaJI	CCTAGG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	526
XmnI	GAANNNNTTC	2 cut(s)	373, 414
XspI	CTAG	6 cut(s)	89, 104, 254, 341, 420, 785
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.