Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00525

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

21119 .. 23421

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAGGTATTTTCCTCCTGTTGTGTCATTCTCTATTCGTATTCTATTAGCCTTGGTATATTCTCTCGCAGGAGAAATCGAAGATTCGGAAGCTAAAATCAGAAAACCTCCGCACTGTTGTCCGAGCTTCCCTCTCATCTGTATTCTGGTTCTCAAGGTACTAGAAGGAACTGTGTTTGATCATATATATCGACTGGCCAAATTATTGAATCGAAGTTCTCATGACAACCAGATGTTATATGCGTTGCAAGAGCACTATAACGAAAAAGACAGGGTTCTCAAAATCAACAATAAGATCTTATTTTTCGGACTAGAAGATGTCCTTCTAATATGTGGTCTTCCGGTTATGGGAAAACTTGTCATAGAAGACTCAAATTCTCAATCAGTGGATGATCTTCTAGGCCCATTGCCCAATGAGGTTGTACGAATCAATTCTATTAAACTCAGTTGGCTGAAAAAGACTTTTGAAAAGGTTCCTAGGGATGTGATTGCGCAAGGAACCGAAAGTCTTGAGTTTGCTAAATATGTTAGAGGATTTGCCCTCTTCATATTAGGCACAACCATTTTTTCTACTGCAGAAGGTAGACATGTAAGTCTGGGATTCTTGGAGTTTTTGCGCAACATAGGTGATATAAAGAATCTTGAATGGGGTGTCGCAATGCTCTCACAGTTGCATCTAAGTTTGGGACGTGGCGGACCAAATATTAATGGCCACGCTTTCTTCCTCATGATTTGGGCATTGGAGCACATTCCAGGATTTGCAAGCATCTTTTTCAGTAATAAAACGAAAGTTGAGAAACCAAGCGAGTTCCCATTGTCTCTGAGCTGGGGACGAAAGATGCAAGCAAAACTTGCCAATAGACATCAAAGAAAGAGAAAAGATTATGATGAAGTCTTGATTGATTGGAAACCTTATAAAAGGTTAAAGGATAACTTTCTCCCCAAAGATCTTGTTAGCCATAGACAAATGGGAGCGTGCAGAATAATTTTGATTCAGCCTTATTCTAACAAAGTCATCTATCATCAGCCTGACTTGTGCCCAATGAAGCTTGGTTTTGAAGAGGCTGATCTAAGCGCTTGTGAACCATTGGGGCTCAAATGGCAAGAATCACCAAGCAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

374

Amino Acids

42.74

Weight (kDa)

9.0

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	103 - 351	4e-20	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AasI	GACNNNNNNGTC	1 cut(s)	591
Acc16I	TGCGCA	2 cut(s)	492, 617
AccI	GTMKAC	1 cut(s)	583
AciI	CCGC	2 cut(s)	110, 693
AcoI	YGGCCR	2 cut(s)	195, 709
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	2 cut(s)	159, 423
AfeI	AGCGCT	1 cut(s)	1075
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	208, 467, 644, 1058
AjiI	CACGTC	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	4 cut(s)	92, 126, 825, 1048
AluI	AGCT	4 cut(s)	92, 126, 825, 1048
Alw21I	GWGCWC	2 cut(s)	255, 747
Alw26I	GTCTC	1 cut(s)	822
Aor51HI	AGCGCT	1 cut(s)	1075
AoxI	GGCC	3 cut(s)	195, 400, 709
ApoI	RAATTY	1 cut(s)	373
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	2 cut(s)	430, 471
AspA2I	CCTAGG	1 cut(s)	476
AspLEI	GCGC	3 cut(s)	493, 618, 1076
AspS9I	GGNCC	2 cut(s)	401, 695
AsuHPI	GGTGA	2 cut(s)	638, 1101
AvaII	GGWCC	1 cut(s)	695
AvrII	CCTAGG	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	1040
BalI	TGGCCA	2 cut(s)	197, 711
BanII	GRGCYC	1 cut(s)	1095
BbsI	GAAGAC	2 cut(s)	329, 372
Bbv12I	GWGCWC	2 cut(s)	255, 747
BciT130I	CCWGG	1 cut(s)	753
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	4 cut(s)	161, 311, 398, 477
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	1077
BglII	AGATCT	3 cut(s)	294, 946, 1119
BlnI	CCTAGG	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	753
Bme18I	GGWCC	1 cut(s)	695
BmgBI	CACGTC	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	401, 695
BmiI	GGNNCC	2 cut(s)	474, 499
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	3 cut(s)	682, 774, 828
BpiI	GAAGAC	2 cut(s)	329, 372
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpuEI	CTTGAG	2 cut(s)	137, 530
BsaJI	CCNNGG	2 cut(s)	51, 476
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	404, 663
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	51, 476
BseGI	GGATG	2 cut(s)	394, 487
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	2 cut(s)	404, 663
BseMII	CTCAG	2 cut(s)	457, 812
BseNI	ACTGG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	1040
BseYI	CCCAGC	1 cut(s)	825
BsgI	GTGCAG	1 cut(s)	997
BshFI	GGCC	3 cut(s)	197, 402, 711
BsiHKAI	GWGCWC	2 cut(s)	255, 747
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	699, 843
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	2 cut(s)	699, 843
BsnI	GGCC	3 cut(s)	197, 402, 711
Bsp1286I	GDGCHC	4 cut(s)	255, 747, 1040, 1095
Bsp143I	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
BspACI	CCGC	2 cut(s)	110, 693
BspANI	GGCC	3 cut(s)	197, 402, 711
BspCNI	CTCAG	2 cut(s)	456, 813
BspHI	TCATGA	2 cut(s)	220, 726
BspLI	GGNNCC	2 cut(s)	474, 499
BspMAI	CTGCAG	1 cut(s)	577
BsrDI	GCAATG	2 cut(s)	404, 663
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	51, 476
BssMI	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
BssT1I	CCWWGG	2 cut(s)	51, 476
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	3 cut(s)	116, 172, 669
Bst6I	CTCTTC	2 cut(s)	548, 1053
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstC8I	GCNNGC	3 cut(s)	763, 843, 976
BstDEI	CTNAG	4 cut(s)	443, 677, 821, 1070
BstF5I	GGATG	2 cut(s)	394, 487
BstH2I	RGCGCY	1 cut(s)	1077
BstHHI	GCGC	3 cut(s)	493, 618, 1076
BstKTI	GATC	6 cut(s)	181, 297, 394, 949, 1069, 1122
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
BstMWI	GCNNNNNNNGC	2 cut(s)	851, 1099
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	1040
BstV2I	GAAGAC	2 cut(s)	329, 372
BstX2I	RGATCY	3 cut(s)	294, 946, 1119
BstYI	RGATCY	3 cut(s)	294, 946, 1119
BsuRI	GGCC	3 cut(s)	197, 402, 711
BtrI	CACGTC	1 cut(s)	689
BtsCI	GGATG	2 cut(s)	394, 487
BtsIMutI	CAGTG	2 cut(s)	112, 390
Cac8I	GCNNGC	3 cut(s)	763, 843, 976
CciI	TCATGA	2 cut(s)	220, 726
CfoI	GCGC	3 cut(s)	493, 618, 1076
Cfr13I	GGNCC	2 cut(s)	401, 695
Csp6I	GTAC	2 cut(s)	158, 422
CviAII	CATG	3 cut(s)	221, 587, 727
CviQI	GTAC	2 cut(s)	158, 422
DdeI	CTNAG	4 cut(s)	443, 677, 821, 1070
DpnI	GATC	6 cut(s)	180, 296, 393, 948, 1068, 1121
DpnII	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
DrdI	GACNNNNNNGTC	1 cut(s)	591
DseDI	GACNNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	2 cut(s)	195, 709
Eam1104I	CTCTTC	2 cut(s)	548, 1053
EarI	CTCTTC	2 cut(s)	548, 1053
EciI	GGCGGA	1 cut(s)	708
Eco130I	CCWWGG	2 cut(s)	51, 476
Eco24I	GRGCYC	1 cut(s)	1095
Eco47I	GGWCC	1 cut(s)	695
Eco47III	AGCGCT	1 cut(s)	1075
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	2 cut(s)	51, 476
EcoT38I	GRGCYC	1 cut(s)	1095
ErhI	CCWWGG	2 cut(s)	51, 476
FaeI	CATG	3 cut(s)	224, 590, 730
FalI	AAGNNNNNCTT	6 cut(s)	306, 338, 834, 866, 917, 949
FaqI	GGGAC	2 cut(s)	699, 843
FatI	CATG	3 cut(s)	220, 586, 726
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	583
FokI	GGATG	2 cut(s)	401, 494
FriOI	GRGCYC	1 cut(s)	1095
FspBI	CTAG	4 cut(s)	161, 311, 398, 477
FspI	TGCGCA	2 cut(s)	492, 617
GlaI	GCGC	3 cut(s)	492, 617, 1075
GsaI	CCCAGC	1 cut(s)	829
HaeII	RGCGCY	1 cut(s)	1077
HaeIII	GGCC	3 cut(s)	197, 402, 711
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	3 cut(s)	493, 618, 1076
Hin1II	CATG	3 cut(s)	224, 590, 730
Hin6I	GCGC	3 cut(s)	491, 616, 1074
HinP1I	GCGC	3 cut(s)	491, 616, 1074
HindIII	AAGCTT	1 cut(s)	1046
HinfI	GANTC	8 cut(s)	83, 208, 368, 426, 600, 637, 991, 1106
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	638, 1101
Hpy166II	GTNNAC	2 cut(s)	584, 1082
Hpy188I	TCNGA	6 cut(s)	88, 101, 123, 308, 822, 1124
Hpy188III	TCNNGA	5 cut(s)	221, 509, 641, 727, 895
Hpy8I	GTNNAC	2 cut(s)	584, 1082
HpyAV	CCTTC	3 cut(s)	158, 332, 572
HpyCH4III	ACNGT	3 cut(s)	116, 172, 669
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	6 cut(s)	247, 575, 673, 761, 841, 978
HpyF10VI	GCNNNNNNNGC	2 cut(s)	851, 1099
HpyF3I	CTNAG	4 cut(s)	443, 677, 821, 1070
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	3 cut(s)	224, 590, 730
HspAI	GCGC	3 cut(s)	491, 616, 1074
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
LmnI	GCTCC	2 cut(s)	742, 971
LweI	GCATC	3 cut(s)	682, 774, 828
MaeI	CTAG	4 cut(s)	161, 311, 398, 477
MaeII	ACGT	1 cut(s)	688
MalI	GATC	6 cut(s)	180, 296, 393, 948, 1068, 1121
MboI	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
MboII	GAAGA	8 cut(s)	92, 326, 329, 377, 386, 535, 712, 1070
MflI	RGATCY	3 cut(s)	294, 946, 1119
MhlI	GDGCHC	4 cut(s)	255, 747, 1040, 1095
MlsI	TGGCCA	2 cut(s)	197, 711
MluCI	AATT	4 cut(s)	200, 373, 430, 984
MluNI	TGGCCA	2 cut(s)	197, 711
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	8 cut(s)	24, 117, 141, 409, 524, 551, 734, 1054
Mox20I	TGGCCA	2 cut(s)	197, 711
MroXI	GAANNNNTTC	2 cut(s)	430, 471
MscI	TGGCCA	2 cut(s)	197, 711
MseI	TTAA	3 cut(s)	438, 705, 923
Msp20I	TGGCCA	2 cut(s)	197, 711
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	2 cut(s)	851, 1099
NdeII	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
NlaIII	CATG	3 cut(s)	224, 590, 730
NlaIV	GGNNCC	2 cut(s)	474, 499
NsbI	TGCGCA	2 cut(s)	492, 617
NspI	RCATGY	1 cut(s)	590
PagI	TCATGA	2 cut(s)	220, 726
PciI	ACATGT	1 cut(s)	586
PdmI	GAANNNNTTC	2 cut(s)	430, 471
PfeI	GAWTC	7 cut(s)	83, 208, 426, 600, 637, 991, 1106
PfoI	TCCNGGA	1 cut(s)	751
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PscI	ACATGT	1 cut(s)	586
PshBI	ATTAAT	1 cut(s)	705
PsiI	TTATAA	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	2 cut(s)	474, 499
PspPI	GGNCC	2 cut(s)	401, 695
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	3 cut(s)	294, 946, 1119
RsaI	GTAC	2 cut(s)	159, 423
RsaNI	GTAC	2 cut(s)	158, 422
SaqAI	TTAA	3 cut(s)	438, 705, 923
Sau3AI	GATC	6 cut(s)	178, 294, 391, 946, 1066, 1119
Sau96I	GGNCC	2 cut(s)	401, 695
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	4 cut(s)	255, 747, 1040, 1095
SfaNI	GCATC	3 cut(s)	682, 774, 828
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	152, 509
SmoI	CTYRAG	2 cut(s)	152, 509
Sse9I	AATT	4 cut(s)	200, 373, 430, 984
SsiI	CCGC	2 cut(s)	110, 693
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	4 cut(s)	161, 311, 398, 477
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	2 cut(s)	51, 476
TaaI	ACNGT	3 cut(s)	116, 172, 669
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	3 cut(s)	78, 190, 211
TasI	AATT	4 cut(s)	200, 373, 430, 984
TfiI	GAWTC	7 cut(s)	83, 208, 426, 600, 637, 991, 1106
Tru1I	TTAA	3 cut(s)	438, 705, 923
Tru9I	TTAA	3 cut(s)	438, 705, 923
TscAI	CASTG	2 cut(s)	119, 390
TspDTI	ATGAA	3 cut(s)	535, 903, 1058
TspRI	CASTG	2 cut(s)	119, 390
VpaK11BI	GGWCC	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	590
XmaJI	CCTAGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	583
XmnI	GAANNNNTTC	2 cut(s)	430, 471
XspI	CTAG	4 cut(s)	161, 311, 398, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.