Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

20518998 .. 20520378

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTGTCAATGCTTGTTTGGGTTTGTGAAGCGACTTTGTGTCTGGATTTCACCAGAGGAAGAAGTAGAGAAGAAGCAAGGGGAGGCTCTCAAGCAAAAAGGCTTTGAAGATGTGGTGTACATCACCGGGCTGAGGGTTAAAGGGGATCTGGTGAGAAGAACAGATGGTTATCCAGTAGTGGGGGGAGATGAACAACACATGGATGTTCTAGGGTTGGGTAAGGTTGATAAAAAGGCACTTAGGGGTGAAAGTATTCGTCTTGGTTATCTGAGAGATACATTTTCTGAAGTTAAAGAAGAGAATGAGCTCGATAAATATGTAAATGCATATGTTCTTTACCTTGTTGGAACTGTTATATTACCGACCAGTAATAGTTATATGTGCTTAGGTTATTTAGATAGCATATGTGATGGGAAGTTCAAACGGTCTGCATGGGGTGTTGCTATGTTGGTGCACATACACTATTGTGTACAAGAGGGAGGAAAAAATATTGGTGGGGCAATGCTATTGGTGATGATATCAGCTTTTAAGCATCTGCTTGATCTTGTTGATAGTTTCTTCAAGCCTTTTGATCTGAGCAAAAACCTACCTCATACTTTCCCACTATCAAAAGACTGGGCGATGCATATTTCAGGAGCGCTTGTGAATAGGCACAGACACAAGGAATTGGACTACACTTCACTGCTGGATGGCAAGGTTACTTGGAAACCTTACAGTAGGTTTCATGACAACAACATCCTCCCCGAGGAGATTAGGGGGGATCTAGAGATGAAGTTTTACAGGGGGGTTCTACCCCATCCACATCATAACAGTTTCATTGCTAATCATCGGCCCGACCACTGCCCTGAACACCTTGGGTTTGACGTTGAAGTGGGACATTGTCCCGAACTGATTGATGTATGCACAAATTGGAAAATCCTGGAAGCGCATTGGAAAAATAGGGAATACATGGTTAGACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

321

Amino Acids

36.76

Weight (kDa)

6.62

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	36 - 252	4.6e-09	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	153, 768
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	119, 471
AfeI	AGCGCT	1 cut(s)	639
AfiI	CCNNNNNNNGG	3 cut(s)	132, 179, 745
AgsI	TTSAA	4 cut(s)	107, 421, 562, 869
AhdI	GACNNNNNGTC	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	918
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	2 cut(s)	307, 524
AluI	AGCT	2 cut(s)	307, 524
Alw21I	GWGCWC	2 cut(s)	309, 456
Alw44I	GTGCAC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	153, 768
Ama87I	CYCGRG	1 cut(s)	743
Aor51HI	AGCGCT	1 cut(s)	639
AoxI	GGCC	1 cut(s)	830
ApaLI	GTGCAC	1 cut(s)	452
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	640, 928
AspS9I	GGNCC	1 cut(s)	831
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	5 cut(s)	42, 115, 163, 257, 523
AvaI	CYCGRG	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	309, 456
BbvCI	CCTCAGC	1 cut(s)	131
BccI	CCATC	4 cut(s)	158, 404, 683, 804
BciT130I	CCWGG	1 cut(s)	920
BcnI	CCSGG	1 cut(s)	127
BfaI	CTAG	2 cut(s)	209, 764
BfoI	RGCGCY	1 cut(s)	641
Bme1390I	CCNGG	2 cut(s)	127, 920
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	831
BmrFI	CCNGG	2 cut(s)	127, 920
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	541, 612
BmuI	ACTGGG	1 cut(s)	625
Bpu10I	CCTNAGC	2 cut(s)	131, 385
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	744, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 179, 745
Bse1I	ACTGG	3 cut(s)	173, 366, 620
Bse3DI	GCAATG	2 cut(s)	507, 816
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	2 cut(s)	744, 853
BseGI	GGATG	4 cut(s)	208, 694, 735, 796
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	132, 179, 745
BseMI	GCAATG	2 cut(s)	507, 816
BseMII	CTCAG	3 cut(s)	122, 260, 566
BseNI	ACTGG	3 cut(s)	173, 366, 620
BseRI	GAGGAG	1 cut(s)	761
BseSI	GKGCMC	1 cut(s)	456
BshFI	GGCC	1 cut(s)	832
BsiHKAI	GWGCWC	2 cut(s)	309, 456
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	867, 888
BslI	CCNNNNNNNGG	3 cut(s)	132, 179, 745
BsmFI	GGGAC	2 cut(s)	867, 888
BsnI	GGCC	1 cut(s)	832
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	309, 456
Bsp1407I	TGTACA	2 cut(s)	117, 469
Bsp143I	GATC	4 cut(s)	145, 541, 571, 760
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	3 cut(s)	123, 261, 567
BspHI	TCATGA	1 cut(s)	724
BspPI	GGATC	2 cut(s)	153, 768
BsrDI	GCAATG	2 cut(s)	507, 816
BsrGI	TGTACA	2 cut(s)	117, 469
BsrI	ACTGG	3 cut(s)	173, 366, 620
BssECI	CCNNGG	2 cut(s)	744, 853
BssMI	GATC	4 cut(s)	145, 541, 571, 760
BssT1I	CCWWGG	1 cut(s)	853
Bst2UI	CCWGG	1 cut(s)	920
Bst4CI	ACNGT	5 cut(s)	352, 426, 716, 812, 960
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	2 cut(s)	117, 469
BstDEI	CTNAG	5 cut(s)	131, 239, 269, 385, 575
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	4 cut(s)	208, 694, 735, 796
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	2 cut(s)	640, 928
BstKTI	GATC	4 cut(s)	148, 544, 574, 763
BstMBI	GATC	4 cut(s)	145, 541, 571, 760
BstNI	CCWGG	1 cut(s)	920
BstSCI	CCNGG	2 cut(s)	125, 918
BstSLI	GKGCMC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	145, 760
BstYI	RGATCY	2 cut(s)	145, 760
BsuRI	GGCC	1 cut(s)	832
BtgZI	GCGATG	1 cut(s)	635
BtsCI	GGATG	4 cut(s)	208, 694, 735, 796
BtsI	GCAGTG	2 cut(s)	680, 838
BtsIMutI	CAGTG	2 cut(s)	680, 838
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	2 cut(s)	640, 928
Cfr13I	GGNCC	1 cut(s)	831
Csp6I	GTAC	2 cut(s)	118, 470
CviAII	CATG	4 cut(s)	199, 432, 725, 949
CviJI	RGCY	7 cut(s)	86, 102, 130, 307, 524, 565, 832
CviKI_1	RGCY	7 cut(s)	86, 102, 130, 307, 524, 565, 832
CviQI	GTAC	2 cut(s)	118, 470
DdeI	CTNAG	5 cut(s)	131, 239, 269, 385, 575
DpnI	GATC	4 cut(s)	147, 543, 573, 762
DpnII	GATC	4 cut(s)	145, 541, 571, 760
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	519
Eco47III	AGCGCT	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	743
EcoICRI	GAGCTC	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	918
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	853
EcoT22I	ATGCAT	2 cut(s)	328, 627
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	853
FaeI	CATG	4 cut(s)	202, 435, 728, 952
FaqI	GGGAC	2 cut(s)	867, 888
FatI	CATG	4 cut(s)	198, 431, 724, 948
FauNDI	CATATG	2 cut(s)	328, 404
FokI	GGATG	4 cut(s)	215, 701, 722, 783
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	2 cut(s)	209, 764
GlaI	GCGC	2 cut(s)	639, 927
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	2 cut(s)	640, 928
Hin1II	CATG	4 cut(s)	202, 435, 728, 952
Hin6I	GCGC	2 cut(s)	638, 926
HinP1I	GCGC	2 cut(s)	638, 926
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	5 cut(s)	42, 115, 163, 257, 523
Hpy166II	GTNNAC	3 cut(s)	118, 454, 470
Hpy188I	TCNGA	3 cut(s)	270, 286, 576
Hpy188III	TCNNGA	5 cut(s)	43, 633, 725, 764, 884
Hpy8I	GTNNAC	3 cut(s)	118, 454, 470
HpyCH4III	ACNGT	5 cut(s)	352, 426, 716, 812, 960
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	5 cut(s)	326, 431, 454, 625, 903
HpyF3I	CTNAG	5 cut(s)	131, 239, 269, 385, 575
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	4 cut(s)	202, 435, 728, 952
HspAI	GCGC	2 cut(s)	638, 926
Kzo9I	GATC	4 cut(s)	145, 541, 571, 760
LmnI	GCTCC	1 cut(s)	635
LweI	GCATC	2 cut(s)	541, 612
MaeI	CTAG	2 cut(s)	209, 764
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	4 cut(s)	147, 543, 573, 762
MboI	GATC	4 cut(s)	145, 541, 571, 760
MboII	GAAGA	6 cut(s)	71, 82, 119, 168, 308, 550
MflI	RGATCY	2 cut(s)	145, 760
MhlI	GDGCHC	2 cut(s)	309, 456
MluCI	AATT	2 cut(s)	665, 907
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	8 cut(s)	49, 76, 126, 469, 473, 600, 739, 749
Mph1103I	ATGCAT	2 cut(s)	328, 627
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	3 cut(s)	138, 291, 528
MslI	CAYNNNNRTG	2 cut(s)	201, 465
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	127, 920
MvaI	CCWGG	1 cut(s)	920
NciI	CCSGG	1 cut(s)	127
NdeI	CATATG	2 cut(s)	328, 404
NdeII	GATC	4 cut(s)	145, 541, 571, 760
NlaIII	CATG	4 cut(s)	202, 435, 728, 952
NsiI	ATGCAT	2 cut(s)	328, 627
OliI	CACNNNNGTG	1 cut(s)	465
PagI	TCATGA	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	879
PfoI	TCCNGGA	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	918
PspPI	GGNCC	1 cut(s)	831
PsuI	RGATCY	2 cut(s)	145, 760
PsyI	GACNNNGTC	1 cut(s)	879
RsaI	GTAC	2 cut(s)	119, 471
RsaNI	GTAC	2 cut(s)	118, 470
RseI	CAYNNNNRTG	2 cut(s)	201, 465
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	138, 291, 528
Sau3AI	GATC	4 cut(s)	145, 541, 571, 760
Sau96I	GGNCC	1 cut(s)	831
ScrFI	CCNGG	2 cut(s)	127, 920
SduI	GDGCHC	2 cut(s)	309, 456
SfaNI	GCATC	2 cut(s)	541, 612
SmiMI	CAYNNNNRTG	2 cut(s)	201, 465
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	665, 907
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	2 cut(s)	209, 764
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	125, 918
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	5 cut(s)	352, 426, 716, 812, 960
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	665, 907
TatI	WGTACW	2 cut(s)	117, 469
Tru1I	TTAA	3 cut(s)	138, 291, 528
Tru9I	TTAA	3 cut(s)	138, 291, 528
TscAI	CASTG	2 cut(s)	687, 845
TspDTI	ATGAA	4 cut(s)	204, 713, 785, 805
TspRI	CASTG	2 cut(s)	687, 845
Tth111I	GACNNNGTC	1 cut(s)	879
VneI	GTGCAC	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	743
XbaI	TCTAGA	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	209, 764
Zsp2I	ATGCAT	2 cut(s)	328, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.