Rh7CG354000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
40507224 .. 40507849
626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG354000.1

Sequence Viewer

Length: 330 bp
ATGGTGGATGTGAGCGGTTGTTGCCCCTTGTGGCAAATTAAAATCTCAGACAAGACTGTTAAAGAAGTAACAGTACGGAACTGGACAAAACATAAAGCAGAGTGGGATAACTTTGAACAAAGTTTTGTGACCGGGACACCTTTGGCTGGTGATGGTAGCTCCGCCTTGAGAAGCAATGATATTCCTCATGCTCCTCATGCAGATACTCCTCATGTAGATACTCCCCATATTCCTCATGCTCCTCATGCAGATACTCCCCATACTCTCCATGCTGCTCATGCAGATACTCCTCCTCGTGCTCCTCGTGCCATCAATGAATCAGGCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.85

Weight (kDa)

6.16

Isoelectric Point (pI)

18.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AciI CCGC 2 cut(s) 15, 162
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BauI CACGAG 2 cut(s) 294, 303
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 259
BccI CCATC 2 cut(s) 146, 317
BcnI CCSGG 1 cut(s) 133
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 181
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 6 cut(s) 183, 198, 231, 279, 282, 291
BseXI GCAGC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 301
BspACI CCGC 2 cut(s) 15, 162
BspCNI CTCAG 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 86
BssSI CACGAG 2 cut(s) 294, 303
Bst2BI CACGAG 2 cut(s) 294, 303
Bst4CI ACNGT 2 cut(s) 58, 73
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 13
BstMWI GCNNNNNNNGC 5 cut(s) 21, 197, 245, 278, 305
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 74
CviAII CATG 7 cut(s) 188, 197, 212, 236, 245, 269, 278
CviJI RGCY 2 cut(s) 146, 159
CviKI_1 RGCY 2 cut(s) 146, 159
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 46
EciI GGCGGA 1 cut(s) 151
FaeI CATG 7 cut(s) 191, 200, 215, 239, 248, 272, 281
FaqI GGGAC 1 cut(s) 148
FatI CATG 7 cut(s) 187, 196, 211, 235, 244, 268, 277
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 273
HapII CCGG 1 cut(s) 132
Hin1II CATG 7 cut(s) 191, 200, 215, 239, 248, 272, 281
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 58, 73
HpyCH4V TGCA 3 cut(s) 200, 248, 281
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 197, 245, 278, 305
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 7 cut(s) 191, 200, 215, 239, 248, 272, 281
LmnI GCTCC 4 cut(s) 164, 196, 244, 304
LpnPI CCDG 4 cut(s) 67, 132, 145, 306
Lsp1109I GCAGC 1 cut(s) 259
MaeIII GTNAC 2 cut(s) 67, 127
MbiI CCGCTC 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 1 cut(s) 36
MnlI CCTC 8 cut(s) 195, 204, 219, 243, 252, 300, 303, 312
MseI TTAA 2 cut(s) 39, 60
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 133
MwoI GCNNNNNNNGC 5 cut(s) 21, 197, 245, 278, 305
NciI CCSGG 1 cut(s) 133
NlaIII CATG 7 cut(s) 191, 200, 215, 239, 248, 272, 281
NmuCI GTSAC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 274
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 39, 60
SatI GCNGC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 301
SetI ASST 2 cut(s) 142, 161
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 1 cut(s) 36
SsiI CCGC 2 cut(s) 15, 162
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 58, 73
TasI AATT 1 cut(s) 36
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 2 cut(s) 39, 60
Tru9I TTAA 2 cut(s) 39, 60
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 330
TspGWI ACGGA 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.