Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

82811165 .. 82811482

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG598100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTGCTGATAGGGGAGAGATTATTCCTAGGGAAAACTTAGCTATTTTGGCTCAATGGAAGGTGGACGATAGAGTCCTTGCAGCATTAGAGGGGACGAGGTTCAATTATTTATATGATTTAGCAGTGAAGGTGGGCAGAAATCAGCATGTCAATAGCATGATAGATTCTCTTGTGAAGCATTATGACAAAAATGACATGTGTTTAAAAGTCCAGGACCAGCACTTATTCTTTGGATTAGAAGACGTGCTGTTCATTAGTGGGCTTAAGGTGGAGGGGAAGCTAGTGACTAAGGGAGGGATAGAAGAAGCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

105

Amino Acids

11.86

Weight (kDa)

5.54

Isoelectric Point (pI)

21.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	2 cut(s)	44, 283
AluI	AGCT	2 cut(s)	44, 283
ApeKI	GCWGC	2 cut(s)	5, 83
AspA2I	CCTAGG	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	217
AvrII	CCTAGG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	215
BfaI	CTAG	3 cut(s)	30, 284, 316
BfrI	CTTAAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	6, 84
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	2 cut(s)	7, 85
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	40, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	2 cut(s)	152, 202
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	3 cut(s)	149, 160, 199
CviJI	RGCY	6 cut(s)	5, 44, 53, 265, 283, 311
CviKI_1	RGCY	6 cut(s)	5, 44, 53, 265, 283, 311
DdeI	CTNAG	2 cut(s)	40, 291
DraI	TTTAAA	1 cut(s)	207
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	3 cut(s)	152, 163, 202
FaiI	YATR	6 cut(s)	115, 117, 150, 161, 186, 200
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	148, 159, 198
Fnu4HI	GCNGC	2 cut(s)	6, 84
Fsp4HI	GCNGC	2 cut(s)	6, 84
FspBI	CTAG	3 cut(s)	30, 284, 316
GluI	GCNGC	2 cut(s)	6, 84
Hin1II	CATG	3 cut(s)	152, 163, 202
HinfI	GANTC	2 cut(s)	75, 167
Hpy166II	GTNNAC	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	55, 124
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	40, 291
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	152, 163, 202
LpnPI	CCDG	3 cut(s)	200, 227, 233
Lsp1109I	GCAGC	1 cut(s)	95
MaeI	CTAG	3 cut(s)	30, 284, 316
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	254, 317
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	85, 93, 268, 290
MseI	TTAA	2 cut(s)	206, 267
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	3 cut(s)	152, 163, 202
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	2 cut(s)	152, 202
PciI	ACATGT	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	7, 85
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	206, 267
SatI	GCNGC	2 cut(s)	6, 84
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	7 cut(s)	46, 66, 104, 135, 249, 273, 285
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	106
SspMI	CTAG	3 cut(s)	30, 284, 316
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	249
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	206, 267
Tru9I	TTAA	2 cut(s)	206, 267
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	5, 83
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	2 cut(s)	152, 202
XmaJI	CCTAGG	1 cut(s)	29
XspI	CTAG	3 cut(s)	30, 284, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.