Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

26808570 .. 26826064

Gene Structure 17495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG128500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGAAAGCTTTCTGCTAGGAAAAAATTATCCCTGTTGGACAAATGGCAACGGGATGAAATGGTCCTTCCTGAATTAGCAGGGACGGGGTTTGATCATTTATATACAGTAGCAAAGCTTTTGGGTCGATGTCATCATGACAATGCTATGGTTCAAGCTCTTCTAGATACTTATATTGTTGAGGAGAAAGTTTTTAGAGTTCAAGATAGGGATATATTTTTTGGTTTAGAAGACGTAGTCTATATTACTGGGCTTAAGATTAGTGAGAAATTAGTGTTGAAGGAAACACCAGTGATCGTTGGTGACAAGGAGAACGATGAAATTGTCAATGTAAGAGGGTTGGGCGAGGTGCCTACTAGGCGGATGAAGCCACATTGTTATGGTGTTGAGTTCAATTGGTTGAGGGAAAGATATCAAACTCTACCTAAAAATGTAGAGCCAGACATTGTAGGCGCGGTATTATTATTGGCCACTAATGATCACAAGTATGTGAACTTGTGCTACTTGAAGAGTGTGTCTAGGGGGGAACTTAGGGAATCTTCATGGGGACTTGCAATCCTCACCCACATGCATTATTATATGCTGACTTATGCGTTGAAAGAGGACCAGACGTCTATAGGTACTCACATGTTCATGCTCATGGTGTGGGCGATCAAGCATATCCCTAGCTTTGCTACCGAACTCTTTGAGCCCGACTTTCGTGATTATCCTGTAGAGTTTCCATTGTCAGTTGGTTGGGCACCACTGATTGCCGCAAAGCTAGGAAATAAGCACACACAAAAAAAATTAATAAATAAATACCAGCTGCAATTGGATCATTTTTGGGACAACGATAATCAGTTTACTTGGCGGCCTTATAATAGGCTTCCTAGGTTCTTCCTTTCCCAAGATCTATCGGACCAGTTATGGTTGGGGAGGTATAAGGGGGTTTTGACTCATCTGATGCACATGCAGCCCATTATAAACCATCATCCCGATCTTTGCCCAAATCAACTTGGGTTTAGAGAGGCCGATGCGAGTCATGTTCCTCTCTTGCTTCAAAATTGCAAGAGAATTCGAACTTGGGATAGACATATCAAAGCGTGGCATAGGGCGGAGCACCGCTTGGTGAAGGAAGGCAGATCCCAGTTGGTTGTTTATGGAAGGAAGAGAAGAAGGGGTGCAAGTAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

391

Amino Acids

45.78

Weight (kDa)

9.21

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	45 - 364	6.9e-12	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	858, 962
AatII	GACGTC	1 cut(s)	614
AccB1I	GGYRCC	2 cut(s)	349, 739
AccII	CGCG	1 cut(s)	455
AciI	CCGC	6 cut(s)	361, 455, 753, 850, 1094, 1102
AclWI	GGATC	2 cut(s)	822, 1116
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	1053
AcyI	GRCGYC	1 cut(s)	611
AfaI	GTAC	1 cut(s)	622
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	7 cut(s)	155, 203, 280, 394, 508, 598, 1040
AhdI	GACNNNNNGTC	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	1045, 1077
AluBI	AGCT	6 cut(s)	10, 118, 158, 669, 760, 805
AluI	AGCT	6 cut(s)	10, 118, 158, 669, 760, 805
Alw21I	GWGCWC	1 cut(s)	1101
AlwI	GGATC	2 cut(s)	822, 1116
AoxI	GGCC	3 cut(s)	468, 851, 1008
ApeKI	GCWGC	2 cut(s)	805, 952
ApoI	RAATTY	1 cut(s)	1053
AseI	ATTAAT	1 cut(s)	788
Asp700I	GAANNNNTTC	1 cut(s)	10
AspA2I	CCTAGG	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	3 cut(s)	64, 604, 898
AsuHPI	GGTGA	3 cut(s)	314, 553, 1120
AsuII	TTCGAA	1 cut(s)	1057
AvaII	GGWCC	3 cut(s)	64, 604, 898
AvrII	CCTAGG	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	742
BalI	TGGCCA	1 cut(s)	470
BanI	GGYRCC	2 cut(s)	349, 739
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	2 cut(s)	792, 964
BccI	CCATC	1 cut(s)	975
BclI	TGATCA	2 cut(s)	94, 478
BfaI	CTAG	7 cut(s)	18, 164, 357, 519, 666, 761, 870
BfmI	CTRYAG	2 cut(s)	615, 711
BfrI	CTTAAG	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	4 cut(s)	753, 806, 851, 953
BlnI	CCTAGG	1 cut(s)	869
BlsI	GCNGC	4 cut(s)	754, 807, 852, 954
Bme18I	GGWCC	3 cut(s)	64, 604, 898
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmgT120I	GGNCC	3 cut(s)	64, 604, 898
BmiI	GGNNCC	2 cut(s)	351, 741
BmrI	ACTGGG	2 cut(s)	258, 1120
BmsI	GCATC	2 cut(s)	933, 1003
BmuI	ACTGGG	2 cut(s)	258, 1120
BpiI	GAAGAC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	1057
BsaHI	GRCGYC	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	869
Bse1I	ACTGG	4 cut(s)	253, 290, 901, 1126
BseDI	CCNNGG	1 cut(s)	869
BseGI	GGATG	3 cut(s)	61, 369, 970
BseNI	ACTGG	4 cut(s)	253, 290, 901, 1126
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	2 cut(s)	792, 964
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	3 cut(s)	470, 853, 1010
BshNI	GGYRCC	2 cut(s)	349, 739
BsiHKAI	GWGCWC	1 cut(s)	1101
BslFI	GGGAC	3 cut(s)	97, 561, 839
BsmFI	GGGAC	3 cut(s)	97, 561, 839
BsnI	GGCC	3 cut(s)	470, 853, 1010
Bsp119I	TTCGAA	1 cut(s)	1057
Bsp1286I	GDGCHC	3 cut(s)	693, 742, 1101
Bsp143I	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
BspACI	CCGC	6 cut(s)	361, 455, 753, 850, 1094, 1102
BspANI	GGCC	3 cut(s)	470, 853, 1010
BspFNI	CGCG	1 cut(s)	455
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	351, 741
BspPI	GGATC	2 cut(s)	822, 1116
BspQI	GCTCTTC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	1057
BspT107I	GGYRCC	2 cut(s)	349, 739
BspTI	CTTAAG	1 cut(s)	254
BsrI	ACTGG	4 cut(s)	253, 290, 901, 1126
BssECI	CCNNGG	1 cut(s)	869
BssMI	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
BssNI	GRCGYC	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	869
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	165, 503, 1142
BstACI	GRCGYC	1 cut(s)	611
BstAFI	CTTAAG	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	1057
BstDEI	CTNAG	1 cut(s)	530
BstF5I	GGATG	3 cut(s)	61, 369, 970
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	8 cut(s)	97, 297, 481, 654, 817, 892, 979, 1124
BstMBI	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 367, 952
BstNSI	RCATGY	3 cut(s)	571, 631, 952
BstSFI	CTRYAG	2 cut(s)	615, 711
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	792, 964
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	889, 1121
BstYI	RGATCY	2 cut(s)	889, 1121
BsuRI	GGCC	3 cut(s)	470, 853, 1010
BtsCI	GGATG	3 cut(s)	61, 369, 970
BtsIMutI	CAGTG	2 cut(s)	297, 743
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	3 cut(s)	64, 604, 898
Csp6I	GTAC	1 cut(s)	621
CviAII	CATG	8 cut(s)	137, 543, 568, 628, 634, 640, 949, 1022
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	8 cut(s)	96, 296, 480, 653, 816, 891, 978, 1123
DpnII	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
DriI	GACNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	3 cut(s)	165, 503, 1142
Eam1105I	GACNNNNNGTC	1 cut(s)	610
EarI	CTCTTC	3 cut(s)	165, 503, 1142
EciI	GGCGGA	2 cut(s)	376, 1109
Eco130I	CCWWGG	1 cut(s)	869
Eco24I	GRGCYC	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	413
Eco47I	GGWCC	3 cut(s)	64, 604, 898
EcoRI	GAATTC	1 cut(s)	1053
EcoRV	GATATC	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	869
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	869
FaeI	CATG	8 cut(s)	140, 546, 571, 631, 637, 643, 952, 1025
FaqI	GGGAC	3 cut(s)	97, 561, 839
FatI	CATG	8 cut(s)	136, 542, 567, 627, 633, 639, 948, 1021
FbaI	TGATCA	2 cut(s)	94, 478
Fnu4HI	GCNGC	4 cut(s)	753, 806, 851, 953
FokI	GGATG	3 cut(s)	68, 376, 957
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	4 cut(s)	753, 806, 851, 953
FspBI	CTAG	7 cut(s)	18, 164, 357, 519, 666, 761, 870
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	4 cut(s)	753, 806, 851, 953
HaeIII	GGCC	3 cut(s)	470, 853, 1010
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	611
Hin1II	CATG	8 cut(s)	140, 546, 571, 631, 637, 643, 952, 1025
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HindIII	AAGCTT	2 cut(s)	8, 116
HinfI	GANTC	3 cut(s)	536, 934, 1018
HphI	GGTGA	3 cut(s)	314, 553, 1120
Hpy166II	GTNNAC	2 cut(s)	493, 843
Hpy188I	TCNGA	2 cut(s)	898, 942
Hpy188III	TCNNGA	6 cut(s)	71, 137, 164, 203, 701, 974
Hpy8I	GTNNAC	2 cut(s)	493, 843
HpyAV	CCTTC	6 cut(s)	77, 274, 1105, 1109, 1137, 1149
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	234, 611
HpyCH4V	TGCA	7 cut(s)	554, 571, 808, 946, 952, 1047, 1163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 367, 952
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	2 cut(s)	234, 611
Hsp92I	GRCGYC	1 cut(s)	611
Hsp92II	CATG	8 cut(s)	140, 546, 571, 631, 637, 643, 952, 1025
HspAI	GCGC	1 cut(s)	453
Ksp22I	TGATCA	2 cut(s)	94, 478
Kzo9I	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	1096
Lsp1109I	GCAGC	2 cut(s)	792, 964
LweI	GCATC	2 cut(s)	933, 1003
MaeI	CTAG	7 cut(s)	18, 164, 357, 519, 666, 761, 870
MaeII	ACGT	2 cut(s)	234, 611
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	8 cut(s)	96, 296, 480, 653, 816, 891, 978, 1123
MboI	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
MboII	GAAGA	7 cut(s)	152, 242, 520, 531, 868, 1159, 1164
MfeI	CAATTG	2 cut(s)	394, 809
MflI	RGATCY	2 cut(s)	889, 1121
MhlI	GDGCHC	3 cut(s)	693, 742, 1101
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	9 cut(s)	26, 74, 269, 321, 394, 785, 809, 1042, 1053
MluNI	TGGCCA	1 cut(s)	470
MlyI	GAGTC	2 cut(s)	928, 1027
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	9 cut(s)	175, 329, 340, 396, 569, 595, 909, 1000, 1038
Mox20I	TGGCCA	1 cut(s)	470
Mph1103I	ATGCAT	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	2 cut(s)	255, 788
MslI	CAYNNNNRTG	6 cut(s)	141, 378, 486, 566, 632, 638
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	805
MspCI	CTTAAG	1 cut(s)	254
MunI	CAATTG	2 cut(s)	394, 809
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	358, 367, 952
NdeII	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
NlaIII	CATG	8 cut(s)	140, 546, 571, 631, 637, 643, 952, 1025
NlaIV	GGNNCC	2 cut(s)	351, 741
NmuCI	GTSAC	1 cut(s)	302
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	3 cut(s)	571, 631, 952
NspV	TTCGAA	1 cut(s)	1057
PagI	TCATGA	1 cut(s)	136
PciI	ACATGT	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	536
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	754, 807, 852, 954
PleI	GAGTC	2 cut(s)	928, 1026
PpsI	GAGTC	2 cut(s)	928, 1026
PscI	ACATGT	1 cut(s)	627
PshBI	ATTAAT	1 cut(s)	788
PsiI	TTATAA	2 cut(s)	858, 962
PspN4I	GGNNCC	2 cut(s)	351, 741
PspPI	GGNCC	3 cut(s)	64, 604, 898
PsrI	GAACNNNNNNTAC	2 cut(s)	485, 517
PsuI	RGATCY	2 cut(s)	889, 1121
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	805
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
RseI	CAYNNNNRTG	6 cut(s)	141, 378, 486, 566, 632, 638
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	255, 788
SatI	GCNGC	4 cut(s)	753, 806, 851, 953
Sau3AI	GATC	8 cut(s)	94, 294, 478, 651, 814, 889, 976, 1121
Sau96I	GGNCC	3 cut(s)	64, 604, 898
SchI	GAGTC	2 cut(s)	928, 1027
SduI	GDGCHC	3 cut(s)	693, 742, 1101
SfaNI	GCATC	2 cut(s)	933, 1003
SfcI	CTRYAG	2 cut(s)	615, 711
SfuI	TTCGAA	1 cut(s)	1057
SinI	GGWCC	3 cut(s)	64, 604, 898
SmiMI	CAYNNNNRTG	6 cut(s)	141, 378, 486, 566, 632, 638
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	9 cut(s)	26, 74, 269, 321, 394, 785, 809, 1042, 1053
SsiI	CCGC	6 cut(s)	361, 455, 753, 850, 1094, 1102
SspMI	CTAG	7 cut(s)	18, 164, 357, 519, 666, 761, 870
StyI	CCWWGG	1 cut(s)	869
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	237, 614
TaqI	TCGA	2 cut(s)	127, 1057
TasI	AATT	9 cut(s)	26, 74, 269, 321, 394, 785, 809, 1042, 1053
TauI	GCSGC	2 cut(s)	755, 853
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	255, 788
Tru9I	TTAA	2 cut(s)	255, 788
TscAI	CASTG	2 cut(s)	297, 750
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	805, 952
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	5 cut(s)	72, 333, 380, 531, 622
TspRI	CASTG	2 cut(s)	297, 750
Tth111I	GACNNNGTC	1 cut(s)	236
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	64, 604, 898
VspI	ATTAAT	1 cut(s)	788
XapI	RAATTY	1 cut(s)	1053
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	3 cut(s)	571, 631, 952
XmaJI	CCTAGG	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	7 cut(s)	18, 164, 357, 519, 666, 761, 870
ZraI	GACGTC	1 cut(s)	612
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.