Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8290979.1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 850

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8290979.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

atgaagccacatggttatgctgttgagtttagttggttgagggaaaaatatcaaactctacctcaaaatgtagagccagatacattggctattcatgttaccgctttttgcctctacattgtaggtgcggtagtattagccactaatgatcacaagtatgtgaacttgtgctacttgaagagtttttctagggagggacttaggcaatatgcatggggacatgcagtcctcgcccacattcactattgtatagtgtcttgtgcatcgaatgacaacaagacgtctataggtgctcacatgttcatgctcatggtgtgggcgatcgagcatatccctagttttgctgcagaattctttggggccgactctcctgattatcctgtagtgtttccattgtcagttggttgggcaccactgattgcctcaaagctaggaaataggcacaaagaaaggaaataccagttgcaattggatcatctttgggacaacgataatcagccttataataggcttcctagcttattccttccccaagatctattggaccagttatggttggggaggtacaagggggttttgattcatctgatgcacaagcagccccttatttaccatcgtcccgatctttgcccaaatcaacttgggcttagagaggccgatgcgagtcatgttcctcccttgcttcgaaatgtgaagagatttcgaagttgggagaaacatttcaaagcgtggtgtgatgcggggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

248

Amino Acids

28.67

Weight (kDa)

8.47

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AatII	GACGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	409
AciI	CCGC	3 cut(s)	102, 128, 740
AclWI	GGATC	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	178, 724
AhdI	GACNNNNNGTC	1 cut(s)	224
AluBI	AGCT	2 cut(s)	430, 519
AluI	AGCT	2 cut(s)	430, 519
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	480
AoxI	GGCC	2 cut(s)	360, 654
ApeKI	GCWGC	2 cut(s)	344, 598
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	719
AspS9I	GGNCC	2 cut(s)	360, 544
AsuII	TTCGAA	2 cut(s)	685, 703
AvaII	GGWCC	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	331, 610
BccI	CCATC	1 cut(s)	621
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	4 cut(s)	189, 336, 431, 516
BfmI	CTRYAG	3 cut(s)	285, 345, 381
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	345, 599
BlsI	GCNGC	2 cut(s)	346, 600
Bme18I	GGWCC	1 cut(s)	544
BmeRI	GACNNNNNGTC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	360, 544
BmiI	GGNNCC	2 cut(s)	361, 411
BmsI	GCATC	4 cut(s)	272, 579, 649, 727
Bpu14I	TTCGAA	2 cut(s)	685, 703
BsaHI	GRCGYC	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	460, 547
BseNI	ACTGG	2 cut(s)	460, 547
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	331, 610
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	362, 656
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	4 cut(s)	210, 231, 497, 603
BsmFI	GGGAC	4 cut(s)	210, 231, 497, 603
BsnI	GGCC	2 cut(s)	362, 656
Bsp119I	TTCGAA	2 cut(s)	685, 703
Bsp1286I	GDGCHC	2 cut(s)	295, 412
Bsp143I	GATC	5 cut(s)	148, 321, 472, 535, 622
BspACI	CCGC	3 cut(s)	102, 128, 740
BspANI	GGCC	2 cut(s)	362, 656
BspLI	GGNNCC	2 cut(s)	361, 411
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	480
BspT104I	TTCGAA	2 cut(s)	685, 703
BspT107I	GGYRCC	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	460, 547
BssMI	GATC	5 cut(s)	148, 321, 472, 535, 622
BssNI	GRCGYC	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	173, 689
BstACI	GRCGYC	1 cut(s)	281
BstBI	TTCGAA	2 cut(s)	685, 703
BstDEI	CTNAG	2 cut(s)	200, 647
BstKTI	GATC	5 cut(s)	151, 324, 475, 538, 625
BstMBI	GATC	5 cut(s)	148, 321, 472, 535, 622
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 598
BstNSI	RCATGY	2 cut(s)	224, 301
BstSFI	CTRYAG	3 cut(s)	285, 345, 381
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	2 cut(s)	331, 610
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	362, 656
BtsIMutI	CAGTG	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	360, 544
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	8 cut(s)	11, 95, 213, 221, 298, 304, 310, 668
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	200, 647
DpnI	GATC	5 cut(s)	150, 323, 474, 537, 624
DpnII	GATC	5 cut(s)	148, 321, 472, 535, 622
DriI	GACNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	173, 689
Eam1105I	GACNNNNNGTC	1 cut(s)	224
EarI	CTCTTC	2 cut(s)	173, 689
Eco47I	GGWCC	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	8 cut(s)	14, 98, 216, 224, 301, 307, 313, 671
FaqI	GGGAC	4 cut(s)	210, 231, 497, 603
FatI	CATG	8 cut(s)	10, 94, 212, 220, 297, 303, 309, 667
FauI	CCCGC	1 cut(s)	733
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	345, 599
Fsp4HI	GCNGC	2 cut(s)	345, 599
FspBI	CTAG	4 cut(s)	189, 336, 431, 516
GluI	GCNGC	2 cut(s)	345, 599
HaeIII	GGCC	2 cut(s)	362, 656
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	8 cut(s)	14, 98, 216, 224, 301, 307, 313, 671
HinfI	GANTC	3 cut(s)	365, 580, 664
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	2 cut(s)	371, 620
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	536
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	6 cut(s)	212, 224, 263, 347, 466, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 598
HpyF3I	CTNAG	2 cut(s)	200, 647
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	8 cut(s)	14, 98, 216, 224, 301, 307, 313, 671
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	5 cut(s)	148, 321, 472, 535, 622
LpnPI	CCDG	5 cut(s)	90, 384, 393, 473, 560
Lsp1109I	GCAGC	2 cut(s)	331, 610
LweI	GCATC	4 cut(s)	272, 579, 649, 727
MaeI	CTAG	4 cut(s)	189, 336, 431, 516
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	5 cut(s)	150, 323, 474, 537, 624
MboI	GATC	5 cut(s)	148, 321, 472, 535, 622
MboII	GAAGA	2 cut(s)	190, 706
MfeI	CAATTG	1 cut(s)	467
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	295, 412
MluCI	AATT	2 cut(s)	350, 467
MlyI	GAGTC	2 cut(s)	359, 673
MnlI	CCTC	9 cut(s)	33, 72, 122, 187, 239, 433, 555, 646, 684
Mph1103I	ATGCAT	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	719
MslI	CAYNNNNRTG	4 cut(s)	15, 156, 302, 308
MunI	CAATTG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	230, 598
NdeII	GATC	5 cut(s)	148, 321, 472, 535, 622
NlaIII	CATG	8 cut(s)	14, 98, 216, 224, 301, 307, 313, 671
NlaIV	GGNNCC	2 cut(s)	361, 411
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	2 cut(s)	224, 301
NspV	TTCGAA	2 cut(s)	685, 703
PciI	ACATGT	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	346, 600
Ple19I	CGATCG	1 cut(s)	324
PleI	GAGTC	2 cut(s)	359, 672
PpsI	GAGTC	2 cut(s)	359, 672
PscI	ACATGT	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	361, 411
PspPI	GGNCC	2 cut(s)	360, 544
PsrI	GAACNNNNNNTAC	2 cut(s)	155, 187
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	535
PvuI	CGATCG	1 cut(s)	324
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	4 cut(s)	15, 156, 302, 308
SatI	GCNGC	2 cut(s)	345, 599
Sau3AI	GATC	5 cut(s)	148, 321, 472, 535, 622
Sau96I	GGNCC	2 cut(s)	360, 544
SchI	GAGTC	2 cut(s)	359, 673
SduI	GDGCHC	2 cut(s)	295, 412
SetI	ASST	7 cut(s)	64, 127, 284, 292, 432, 521, 566
SfaNI	GCATC	4 cut(s)	272, 579, 649, 727
SfcI	CTRYAG	3 cut(s)	285, 345, 381
SfuI	TTCGAA	2 cut(s)	685, 703
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	4 cut(s)	15, 156, 302, 308
Sse9I	AATT	2 cut(s)	350, 467
SsiI	CCGC	3 cut(s)	102, 128, 740
SspMI	CTAG	4 cut(s)	189, 336, 431, 516
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	4 cut(s)	266, 324, 685, 703
TasI	AATT	2 cut(s)	350, 467
TfiI	GAWTC	1 cut(s)	580
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	2 cut(s)	344, 598
TspDTI	ATGAA	4 cut(s)	17, 83, 292, 572
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	544
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	2 cut(s)	224, 301
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	4 cut(s)	189, 336, 431, 516
ZraI	GACGTC	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.